Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AV541_RS01625 Genome accession   NZ_CP014141
Coordinates   285328..286350 (+) Length   340 a.a.
NCBI ID   WP_008633762.1    Uniprot ID   H7GIF8
Organism   Thermus parvatiensis strain RL     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 280328..291350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AV541_RS01600 (AV541_01605) - 281133..281759 (-) 627 WP_038035631.1 HAD family hydrolase -
  AV541_RS13460 (AV541_01610) - 281764..282812 (-) 1049 Protein_306 MFS transporter -
  AV541_RS01610 (AV541_01615) - 282851..283627 (+) 777 WP_060384094.1 glycine cleavage system protein T -
  AV541_RS01615 (AV541_01620) - 283600..284784 (+) 1185 WP_060384095.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  AV541_RS01620 (AV541_01625) thpR 284781..285377 (+) 597 WP_008633763.1 RNA 2',3'-cyclic phosphodiesterase -
  AV541_RS01625 (AV541_01630) recA 285328..286350 (+) 1023 WP_008633762.1 recombinase RecA Machinery gene
  AV541_RS01630 (AV541_01635) rny 286351..288075 (+) 1725 WP_060384096.1 ribonuclease Y -
  AV541_RS01635 (AV541_01640) - 288087..289124 (+) 1038 WP_011173840.1 rod shape-determining protein -
  AV541_RS01640 (AV541_01645) fabZ 289131..289559 (+) 429 WP_011173839.1 3-hydroxyacyl-ACP dehydratase FabZ -
  AV541_RS01645 (AV541_01650) - 289559..290200 (+) 642 WP_060384097.1 S4 domain-containing protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36492.97 Da        Isoelectric Point: 5.3857

>NTDB_id=168668 AV541_RS01625 WP_008633762.1 285328..286350(+) (recA) [Thermus parvatiensis strain RL]
MDESKRKALENALKAIEKEFGKGAVMRLGEMPKQQVDVIPTGSLALDLALGIGGIPRGRIVEIYGPESGGKTTLALTIIA
QAQRRGGVAAFVDAEHALDPLYAQRLGVQVEDLLVSQPDTGEQALEIVELLARSGAVDVIVVDSVAALVPRAEIEGEMGD
QHVGLQARLMSQALRKLTAVLAKSNTAAIFINQVREKVGITYGNPETTPGGRALKFYSSVRLDVRKSGQPIKVGNEAVGV
KVRVKVVKNKLAPPFREAELEIYFGRGLDPVADLVNVAVAANVIEKAGSWFSYGEARLGQGKEKAAEYLRERPELLEEIR
AKVLERAGEVVLAASEEEGE

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=168668 AV541_RS01625 WP_008633762.1 285328..286350(+) (recA) [Thermus parvatiensis strain RL]
ATGGACGAAAGCAAGCGCAAGGCCCTGGAGAACGCCCTGAAGGCGATTGAGAAGGAGTTCGGCAAGGGGGCGGTGATGCG
GCTGGGCGAGATGCCCAAGCAGCAGGTGGACGTGATCCCCACCGGCTCCCTCGCCCTAGACCTCGCCCTGGGGATCGGCG
GCATCCCCCGGGGGCGGATCGTGGAGATCTACGGCCCCGAGTCCGGGGGCAAGACCACCCTCGCCCTCACCATCATCGCC
CAGGCCCAGAGGCGGGGCGGGGTGGCCGCCTTCGTGGACGCGGAGCACGCCCTGGACCCCCTGTACGCCCAGCGCCTCGG
CGTCCAGGTGGAGGACCTCCTGGTCTCCCAGCCCGACACGGGCGAGCAGGCCCTGGAGATCGTGGAGCTCCTCGCCCGCT
CGGGGGCGGTGGACGTGATCGTGGTGGACTCGGTGGCCGCCTTGGTCCCCCGGGCGGAGATTGAGGGGGAGATGGGGGAC
CAGCACGTGGGCCTCCAGGCCCGGCTCATGAGCCAGGCCCTTCGCAAGCTCACCGCGGTGCTCGCCAAGAGCAACACCGC
CGCCATCTTCATCAACCAGGTGCGGGAGAAGGTGGGGATCACGTACGGCAACCCCGAGACCACTCCCGGGGGGCGGGCCC
TCAAGTTCTACTCCAGCGTGCGCCTGGACGTGCGCAAAAGCGGCCAGCCCATCAAGGTGGGGAACGAGGCCGTGGGCGTC
AAGGTGCGGGTCAAGGTGGTGAAGAACAAGCTCGCCCCTCCCTTCCGCGAGGCAGAGCTGGAGATCTACTTTGGCCGGGG
CCTGGACCCGGTGGCCGACCTGGTGAACGTGGCCGTGGCGGCGAACGTCATTGAGAAGGCGGGGAGCTGGTTCTCCTACG
GGGAGGCCCGGCTGGGCCAGGGCAAGGAGAAGGCGGCGGAGTACCTGCGGGAGCGCCCCGAGCTTTTGGAAGAGATCCGG
GCCAAGGTGTTGGAGCGGGCTGGGGAGGTGGTGCTGGCCGCCAGCGAGGAAGAGGGGGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H7GIF8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

67.89

96.176

0.653
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.933

100

0.615
  recA Pseudomonas stutzeri DSM 10701

63.11

96.471

0.609
  recA Streptococcus mutans UA159

60.177

99.706

0.6
  recA Acinetobacter baylyi ADP1

59.302

100

0.6
  recA Bacillus subtilis subsp. subtilis str. 168

62.346

95.294

0.594
  recA Streptococcus pyogenes NZ131

62.037

95.294

0.591
  recA Vibrio cholerae strain A1552

61.231

95.588

0.585
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.231

95.588

0.585
  recA Streptococcus pneumoniae Rx1

60.856

96.176

0.585
  recA Streptococcus pneumoniae D39

60.856

96.176

0.585
  recA Streptococcus pneumoniae R6

60.856

96.176

0.585
  recA Streptococcus pneumoniae TIGR4

60.856

96.176

0.585
  recA Streptococcus mitis SK321

61.491

94.706

0.582
  recA Streptococcus mitis NCTC 12261

61.491

94.706

0.582
  recA Neisseria gonorrhoeae strain FA1090

61.111

95.294

0.582
  recA Neisseria gonorrhoeae MS11

61.111

95.294

0.582
  recA Neisseria gonorrhoeae MS11

61.111

95.294

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

61.371

94.412

0.579
  recA Acinetobacter baumannii D1279779

60.123

95.882

0.576
  recA Glaesserella parasuis strain SC1401

57.31

100

0.576
  recA Lactococcus lactis subsp. cremoris KW2

58.333

98.824

0.576
  recA Helicobacter pylori strain NCTC11637

59.271

96.765

0.574
  recA Helicobacter pylori 26695

59.271

96.765

0.574
  recA Ralstonia pseudosolanacearum GMI1000

60.703

92.059

0.559
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

55.758

97.059

0.541

Multiple sequence alignment