Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | AL524_RS33950 | Genome accession | NZ_CP014070 |
| Coordinates | 1736900..1737961 (+) | Length | 353 a.a. |
| NCBI ID | WP_044255092.1 | Uniprot ID | A0AAW9M4I5 |
| Organism | Citrobacter amalonaticus strain FDAARGOS_165 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1729871..1771600 | 1736900..1737961 | within | 0 |
Gene organization within MGE regions
Location: 1729871..1771600
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL524_RS33905 (AL524_08340) | gutQ | 1729871..1730836 (-) | 966 | WP_042999604.1 | arabinose-5-phosphate isomerase GutQ | - |
| AL524_RS33910 (AL524_08345) | srlR | 1730829..1731602 (-) | 774 | WP_042999605.1 | glucitol operon DNA-binding transcriptional repressor SrlR | - |
| AL524_RS33915 (AL524_08350) | gutM | 1731671..1732030 (-) | 360 | WP_042999606.1 | transcriptional regulator GutM | - |
| AL524_RS33920 (AL524_08355) | srlD | 1732122..1732901 (-) | 780 | WP_042999607.1 | sorbitol-6-phosphate dehydrogenase | - |
| AL524_RS33925 (AL524_08360) | srlB | 1732912..1733274 (-) | 363 | WP_061069687.1 | PTS glucitol/sorbitol transporter subunit IIA | - |
| AL524_RS33930 (AL524_08365) | - | 1733286..1734269 (-) | 984 | WP_042999609.1 | PTS glucitol/sorbitol transporter subunit IIB | - |
| AL524_RS33935 (AL524_08370) | srlA | 1734266..1734829 (-) | 564 | WP_042999610.1 | PTS glucitol/sorbitol transporter subunit IIC | - |
| AL524_RS33940 (AL524_08375) | mltB | 1735099..1736178 (+) | 1080 | WP_042999611.1 | lytic murein transglycosylase B | - |
| AL524_RS33945 (AL524_08380) | pncC | 1736322..1736819 (+) | 498 | WP_044266604.1 | nicotinamide-nucleotide amidase | - |
| AL524_RS33950 (AL524_08385) | recA | 1736900..1737961 (+) | 1062 | WP_044255092.1 | recombinase RecA | Machinery gene |
| AL524_RS33955 (AL524_08390) | recX | 1738077..1738577 (+) | 501 | WP_061069688.1 | recombination regulator RecX | - |
| AL524_RS33960 (AL524_08395) | alaS | 1738706..1741333 (+) | 2628 | WP_061069689.1 | alanine--tRNA ligase | - |
| AL524_RS33965 (AL524_08400) | csrA | 1741574..1741759 (+) | 186 | WP_000906486.1 | carbon storage regulator CsrA | - |
| AL524_RS33995 (AL524_08430) | yqaB | 1743066..1743632 (+) | 567 | WP_042999618.1 | fructose-1-phosphate/6-phosphogluconate phosphatase | - |
| AL524_RS34000 (AL524_08435) | - | 1743629..1744057 (+) | 429 | WP_042999619.1 | YqaA family protein | - |
| AL524_RS34005 (AL524_08440) | gshA | 1744136..1745695 (+) | 1560 | WP_044255102.1 | glutamate--cysteine ligase | - |
| AL524_RS34010 (AL524_08445) | luxS | 1745844..1746359 (+) | 516 | WP_003037312.1 | S-ribosylhomocysteine lyase | - |
| AL524_RS34015 (AL524_08450) | - | 1746401..1747516 (-) | 1116 | WP_044266597.1 | ATP-binding protein | - |
| AL524_RS34020 (AL524_08455) | - | 1747513..1748220 (-) | 708 | WP_042999622.1 | RNA ligase family protein | - |
| AL524_RS34025 (AL524_08460) | emrB | 1748491..1750029 (-) | 1539 | WP_042999623.1 | multidrug efflux MFS transporter permease subunit EmrB | - |
| AL524_RS34030 (AL524_08465) | emrA | 1750045..1751217 (-) | 1173 | WP_042999624.1 | multidrug efflux MFS transporter periplasmic adaptor subunit EmrA | - |
| AL524_RS34035 (AL524_08470) | mprA | 1751342..1751872 (-) | 531 | WP_042999625.1 | transcriptional repressor MprA | - |
| AL524_RS34040 (AL524_08475) | ygaH | 1751963..1752298 (-) | 336 | WP_042326037.1 | L-valine transporter subunit YgaH | - |
| AL524_RS34045 (AL524_08480) | - | 1752288..1753025 (-) | 738 | WP_043001836.1 | AzlC family ABC transporter permease | - |
| AL524_RS34050 (AL524_08485) | - | 1753140..1754324 (-) | 1185 | WP_061069690.1 | MFS transporter | - |
| AL524_RS34055 (AL524_08490) | proX | 1754520..1755515 (-) | 996 | WP_042999627.1 | glycine betaine/L-proline ABC transporter substrate-binding protein ProX | - |
| AL524_RS34060 (AL524_08495) | proW | 1755584..1756648 (-) | 1065 | WP_042999628.1 | glycine betaine/L-proline ABC transporter permease ProW | - |
| AL524_RS34065 (AL524_08500) | proV | 1756641..1757843 (-) | 1203 | WP_061069691.1 | glycine betaine/L-proline ABC transporter ATP-binding protein ProV | - |
| AL524_RS34075 (AL524_08505) | nrdF | 1758199..1759158 (-) | 960 | WP_042999630.1 | class 1b ribonucleoside-diphosphate reductase subunit beta | - |
| AL524_RS34080 (AL524_08510) | nrdE | 1759169..1761313 (-) | 2145 | WP_061069692.1 | class 1b ribonucleoside-diphosphate reductase subunit alpha | - |
| AL524_RS34085 (AL524_08515) | nrdI | 1761286..1761696 (-) | 411 | WP_044326900.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| AL524_RS34090 (AL524_08520) | nrdH | 1761693..1761938 (-) | 246 | WP_044266583.1 | glutaredoxin-like protein NrdH | - |
| AL524_RS34095 (AL524_08525) | - | 1762129..1762560 (-) | 432 | WP_044255114.1 | carboxymuconolactone decarboxylase family protein | - |
| AL524_RS34100 (AL524_08530) | - | 1762649..1763992 (+) | 1344 | WP_061069693.1 | PLP-dependent aminotransferase family protein | - |
| AL524_RS34105 (AL524_08535) | - | 1764048..1764374 (-) | 327 | WP_042999636.1 | DUF883 domain-containing protein | - |
| AL524_RS34110 (AL524_08540) | - | 1764536..1764880 (+) | 345 | WP_042999637.1 | DUF2002 family protein | - |
| AL524_RS34115 (AL524_08545) | alaE | 1764915..1765364 (-) | 450 | WP_042999638.1 | L-alanine exporter AlaE | - |
| AL524_RS34125 (AL524_08555) | stpA | 1765836..1766237 (+) | 402 | WP_061069695.1 | DNA-binding protein StpA | - |
| AL524_RS34130 (AL524_08560) | - | 1766281..1766808 (-) | 528 | WP_044255122.1 | rhodanese family protein | - |
| AL524_RS34135 (AL524_08565) | - | 1766818..1767117 (-) | 300 | WP_042999641.1 | ArsR/SmtB family transcription factor | - |
| AL524_RS34140 (AL524_24655) | - | 1767299..1767469 (+) | 171 | WP_042999642.1 | YqaE/Pmp3 family membrane protein | - |
| AL524_RS34145 (AL524_08570) | lysM | 1767593..1768042 (+) | 450 | WP_061069696.1 | peptidoglycan-binding protein LysM | - |
| AL524_RS34150 (AL524_08575) | csiR | 1768049..1768741 (-) | 693 | WP_042999644.1 | DNA-binding transcriptional regulator CsiR | - |
| AL524_RS34155 (AL524_08580) | gabP | 1768787..1770187 (-) | 1401 | WP_044327460.1 | GABA permease | - |
| AL524_RS34160 (AL524_08585) | gabT | 1770317..1771600 (-) | 1284 | WP_058586992.1 | 4-aminobutyrate--2-oxoglutarate transaminase | - |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 37959.37 Da Isoelectric Point: 4.8095
>NTDB_id=168273 AL524_RS33950 WP_044255092.1 1736900..1737961(+) (recA) [Citrobacter amalonaticus strain FDAARGOS_165]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATTWLKDNPATAKEI
EKKVREMLLNNQDAKPDFAVDDGEGVAETNEDF
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATTWLKDNPATAKEI
EKKVREMLLNNQDAKPDFAVDDGEGVAETNEDF
Nucleotide
Download Length: 1062 bp
>NTDB_id=168273 AL524_RS33950 WP_044255092.1 1736900..1737961(+) (recA) [Citrobacter amalonaticus strain FDAARGOS_165]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCGCTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCTATGGATGTGGAAACGATCTCCACAGGTTCGCTTTCACTGGATATCGCGCTGGGCG
CAGGCGGCCTGCCGATGGGCCGCATCGTCGAAATCTACGGGCCGGAATCATCCGGTAAAACCACGCTGACGCTGCAGGTG
ATTGCCGCGGCGCAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCAGAACACGCGCTGGACCCGATCTATGCACGTAA
GCTGGGCGTTGATATCGACAATCTGCTCTGTTCTCAGCCGGACACCGGTGAACAGGCGCTGGAAATCTGTGATGCGCTGG
CGCGTTCTGGCGCTGTCGACGTTATCGTTGTCGACTCCGTAGCGGCACTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGTGACTCTCACATGGGCCTCGCGGCGCGTATGATGAGCCAGGCGATGCGTAAACTGGCCGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACGACCGGTGGTA
ACGCACTGAAATTCTACGCTTCTGTTCGTCTGGATATCCGTCGTATTGGCGCGGTGAAAGAGGGCGATAACGTGGTGGGC
AGCGAAACCCGCGTGAAGGTGGTGAAAAACAAAATTGCGGCACCGTTTAAACAGGCTGAATTCCAGATCCTTTACGGTGA
AGGCATCAATTTCTATGGCGAACTGGTTGACCTGGGCGTGAAAGAGAAGCTGATCGAGAAAGCGGGCGCCTGGTACAGCT
ACAACGGCGAGAAAATTGGTCAGGGTAAAGCGAATGCAACCACCTGGCTGAAAGACAACCCGGCGACTGCGAAGGAAATT
GAGAAGAAAGTTCGCGAAATGCTGCTCAATAACCAGGATGCCAAACCTGACTTCGCTGTTGATGACGGTGAAGGCGTTGC
GGAAACCAACGAAGATTTTTAA
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCGCTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCTATGGATGTGGAAACGATCTCCACAGGTTCGCTTTCACTGGATATCGCGCTGGGCG
CAGGCGGCCTGCCGATGGGCCGCATCGTCGAAATCTACGGGCCGGAATCATCCGGTAAAACCACGCTGACGCTGCAGGTG
ATTGCCGCGGCGCAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCAGAACACGCGCTGGACCCGATCTATGCACGTAA
GCTGGGCGTTGATATCGACAATCTGCTCTGTTCTCAGCCGGACACCGGTGAACAGGCGCTGGAAATCTGTGATGCGCTGG
CGCGTTCTGGCGCTGTCGACGTTATCGTTGTCGACTCCGTAGCGGCACTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGTGACTCTCACATGGGCCTCGCGGCGCGTATGATGAGCCAGGCGATGCGTAAACTGGCCGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACGACCGGTGGTA
ACGCACTGAAATTCTACGCTTCTGTTCGTCTGGATATCCGTCGTATTGGCGCGGTGAAAGAGGGCGATAACGTGGTGGGC
AGCGAAACCCGCGTGAAGGTGGTGAAAAACAAAATTGCGGCACCGTTTAAACAGGCTGAATTCCAGATCCTTTACGGTGA
AGGCATCAATTTCTATGGCGAACTGGTTGACCTGGGCGTGAAAGAGAAGCTGATCGAGAAAGCGGGCGCCTGGTACAGCT
ACAACGGCGAGAAAATTGGTCAGGGTAAAGCGAATGCAACCACCTGGCTGAAAGACAACCCGGCGACTGCGAAGGAAATT
GAGAAGAAAGTTCGCGAAATGCTGCTCAATAACCAGGATGCCAAACCTGACTTCGCTGTTGATGACGGTGAAGGCGTTGC
GGAAACCAACGAAGATTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.