Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AL543_RS12565 Genome accession   NZ_CP014043
Coordinates   1195113..1196177 (+) Length   354 a.a.
NCBI ID   WP_000344159.1    Uniprot ID   A0A1D8SDN7
Organism   Vibrio mimicus strain FDAARGOS_112     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1190113..1201177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL543_RS12540 (AL543_11800) cysP 1190433..1191434 (+) 1002 WP_061052073.1 thiosulfate ABC transporter substrate-binding protein CysP -
  AL543_RS12545 (AL543_11805) cysT 1191500..1192351 (+) 852 WP_061052074.1 sulfate/thiosulfate ABC transporter permease CysT -
  AL543_RS12550 (AL543_11810) cysW 1192363..1193226 (+) 864 WP_000951364.1 sulfate ABC transporter permease subunit CysW -
  AL543_RS12555 (AL543_11815) - 1193223..1194353 (+) 1131 WP_000027763.1 sulfate/molybdate ABC transporter ATP-binding protein -
  AL543_RS12560 (AL543_11820) pncC 1194473..1194979 (+) 507 WP_061052075.1 nicotinamide-nucleotide amidase -
  AL543_RS12565 (AL543_11825) recA 1195113..1196177 (+) 1065 WP_000344159.1 recombinase RecA Machinery gene
  AL543_RS12570 (AL543_11830) recX 1196310..1196768 (+) 459 WP_061052076.1 recombination regulator RecX -
  AL543_RS12575 (AL543_11835) alaS 1196942..1199524 (+) 2583 WP_061052077.1 alanine--tRNA ligase -
  AL543_RS12580 (AL543_11840) - 1199728..1200915 (+) 1188 WP_061052078.1 aspartate kinase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38227.83 Da        Isoelectric Point: 5.0766

>NTDB_id=167888 AL543_RS12565 WP_000344159.1 1195113..1196177(+) (recA) [Vibrio mimicus strain FDAARGOS_112]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKENTEIAKTLDK
KLREMLLNPENMQLTGETSSAADDVEFGAVPEEF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=167888 AL543_RS12565 WP_000344159.1 1195113..1196177(+) (recA) [Vibrio mimicus strain FDAARGOS_112]
ATGGACGAGAACAAACAAAAGGCACTAGCGGCCGCCCTCGGTCAAATTGAAAAGCAATTTGGTAAAGGTTCCATCATGCG
CCTAGGCGACAACCGTGCCATGGACGTAGAAACCATTTCGACCGGTTCTCTATCTCTTGATATCGCTTTGGGAGCGGGTG
GCCTGCCAATGGGACGTATCGTTGAGATCTTCGGCCCAGAATCTTCAGGTAAAACAACGTTAACTCTTGAGCTGATTGCC
GCTGCGCAACGTGAAGGTAAAACTTGTGCCTTTATCGATGCTGAGCACGCGCTGGATCCAGTTTATGCCAAGAAACTGGG
TGTTAATATCGATGAGCTACTGGTTTCTCAGCCAGATACCGGTGAACAAGCACTAGAAATTTGTGATGCACTGGCTCGCT
CTGGTGCGGTAGATGTGATTGTTGTCGACTCTGTTGCGGCTTTGACACCAAAAGCAGAAATTGAAGGCGAAATGGGCGAC
AGCCACATGGGTCTGCAAGCGCGTATGTTGTCGCAAGCGATGCGTAAACTGACGGGTAACCTGAAGCAATCCAATTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACTACCACTGGCGGTAACGCAC
TGAAATTCTATGCTTCTGTTCGTCTTGATATTCGTCGTACTGGCGCAATCAAAGAAGGCGAAGAAGTCGTGGGTAACGAA
ACCCGCATCAAAGTAGTGAAGAACAAGATTGCTGCACCGTTTAAAGAAGCCAACACTCAGATCATGTACGGTCAAGGTTT
CAACCGTGAAGGTGAATTGATCGATCTTGGTGTGAAACACAAAATGGTTGAAAAGTCAGGCGCTTGGTACAGCTACAACG
GTGATAAAATCGGCCAAGGCAAAGCGAATGCATGCAAGTATCTGAAAGAAAATACAGAAATTGCTAAAACGCTAGATAAA
AAACTGCGTGAAATGCTGCTTAACCCAGAGAACATGCAACTGACTGGTGAAACTTCTTCTGCCGCTGATGATGTAGAATT
TGGCGCAGTACCAGAAGAGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D8SDN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

99.153

100

0.992
  recA Vibrio cholerae strain A1552

99.153

100

0.992
  recA Pseudomonas stutzeri DSM 10701

72.674

97.175

0.706
  recA Acinetobacter baylyi ADP1

70.231

97.74

0.686
  recA Glaesserella parasuis strain SC1401

68.946

99.153

0.684
  recA Acinetobacter baumannii D1279779

73.7

92.373

0.681
  recA Neisseria gonorrhoeae MS11

66.949

100

0.669
  recA Neisseria gonorrhoeae MS11

66.949

100

0.669
  recA Neisseria gonorrhoeae strain FA1090

66.949

100

0.669
  recA Ralstonia pseudosolanacearum GMI1000

71.383

87.853

0.627
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.739

97.458

0.602
  recA Helicobacter pylori strain NCTC11637

61.062

95.763

0.585
  recA Helicobacter pylori 26695

60.767

95.763

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

63.863

90.678

0.579
  recA Streptococcus pneumoniae D39

62.539

91.243

0.571
  recA Streptococcus pneumoniae Rx1

62.539

91.243

0.571
  recA Streptococcus pneumoniae R6

62.539

91.243

0.571
  recA Streptococcus pneumoniae TIGR4

62.539

91.243

0.571
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.725

93.503

0.568
  recA Streptococcus mitis NCTC 12261

61.92

91.243

0.565
  recA Streptococcus mitis SK321

61.61

91.243

0.562
  recA Streptococcus mutans UA159

60.923

91.808

0.559
  recA Lactococcus lactis subsp. cremoris KW2

60.991

91.243

0.556
  recA Streptococcus pyogenes NZ131

60.308

91.808

0.554
  recA Latilactobacillus sakei subsp. sakei 23K

60.748

90.678

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.981

88.418

0.548

Multiple sequence alignment