Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AL479_RS03550 Genome accession   NZ_CP014015
Coordinates   737664..738725 (-) Length   353 a.a.
NCBI ID   WP_061075067.1    Uniprot ID   -
Organism   Citrobacter amalonaticus strain FDAARGOS_122     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 732664..743725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL479_RS03535 (AL479_03350) csrA 733866..734051 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  AL479_RS03540 (AL479_03355) alaS 734289..736919 (-) 2631 WP_061075065.1 alanine--tRNA ligase -
  AL479_RS03545 (AL479_03360) recX 737048..737548 (-) 501 WP_061075066.1 recombination regulator RecX -
  AL479_RS03550 (AL479_03365) recA 737664..738725 (-) 1062 WP_061075067.1 recombinase RecA Machinery gene
  AL479_RS03555 (AL479_03370) pncC 738806..739303 (-) 498 WP_061075068.1 nicotinamide-nucleotide amidase -
  AL479_RS03560 (AL479_03375) mltB 739447..740526 (-) 1080 WP_061075069.1 lytic murein transglycosylase B -
  AL479_RS03565 (AL479_03380) srlA 740796..741359 (+) 564 WP_042322680.1 PTS glucitol/sorbitol transporter subunit IIC -
  AL479_RS03570 (AL479_03385) srlE 741356..742345 (+) 990 WP_061075070.1 PTS glucitol/sorbitol transporter subunit IIB -
  AL479_RS03575 (AL479_03390) srlB 742357..742719 (+) 363 WP_061075071.1 PTS glucitol/sorbitol transporter subunit IIA -
  AL479_RS03580 (AL479_03395) srlD 742730..743509 (+) 780 WP_061075072.1 sorbitol-6-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37902.32 Da        Isoelectric Point: 4.8095

>NTDB_id=167207 AL479_RS03550 WP_061075067.1 737664..738725(-) (recA) [Citrobacter amalonaticus strain FDAARGOS_122]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATAWLKDNPATAKEI
EKKVREMLLNSQDAKPDFAVDDGEGVAETNEDF

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=167207 AL479_RS03550 WP_061075067.1 737664..738725(-) (recA) [Citrobacter amalonaticus strain FDAARGOS_122]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCGCTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCTATGGATGTGGAAACGATCTCCACGGGTTCGCTTTCACTGGATATCGCGCTGGGCG
CAGGCGGCCTGCCGATGGGCCGTATCGTCGAAATCTACGGGCCGGAATCATCCGGTAAAACCACGCTGACGCTGCAGGTG
ATTGCCGCGGCGCAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCTGAACACGCGCTGGACCCGATCTATGCACGTAA
GCTGGGCGTTGATATCGACAATCTGCTCTGTTCTCAGCCGGACACCGGTGAACAGGCGCTGGAAATCTGTGACGCACTGG
CGCGTTCTGGCGCCGTCGACGTTATCGTTGTCGACTCCGTCGCGGCGCTGACGCCGAAAGCGGAAATCGAAGGTGAAATC
GGTGACTCTCACATGGGCCTCGCGGCGCGTATGATGAGCCAGGCGATGCGTAAACTGGCCGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACGACCGGTGGTA
ACGCACTGAAATTCTATGCCTCTGTTCGTCTGGACATCCGCCGTATTGGCGCGGTGAAAGAGGGCGATAACGTGGTGGGC
AGCGAAACCCGCGTGAAAGTGGTGAAAAACAAAATTGCGGCGCCGTTTAAACAGGCTGAATTCCAGATCCTTTACGGTGA
AGGCATCAACTTCTATGGTGAACTGGTCGACCTGGGCGTGAAAGAGAAGCTGATCGAGAAAGCGGGCGCCTGGTACAGCT
ACAACGGCGAGAAAATTGGTCAGGGTAAAGCGAATGCAACCGCCTGGCTGAAAGACAACCCGGCTACCGCGAAGGAAATT
GAGAAAAAAGTTCGCGAAATGCTGCTCAATAGCCAGGATGCTAAACCTGACTTCGCTGTTGATGACGGTGAAGGTGTTGC
GGAAACCAACGAAGATTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

82.081

98.017

0.805
  recA Vibrio cholerae O1 biovar El Tor strain E7946

82.081

98.017

0.805
  recA Pseudomonas stutzeri DSM 10701

72.727

96.601

0.703
  recA Acinetobacter baumannii D1279779

74.164

93.201

0.691
  recA Acinetobacter baylyi ADP1

74.312

92.635

0.688
  recA Glaesserella parasuis strain SC1401

70.606

93.484

0.66
  recA Neisseria gonorrhoeae MS11

68.405

92.351

0.632
  recA Neisseria gonorrhoeae MS11

68.405

92.351

0.632
  recA Neisseria gonorrhoeae strain FA1090

68.405

92.351

0.632
  recA Ralstonia pseudosolanacearum GMI1000

71.061

88.102

0.626
  recA Streptococcus mitis SK321

60.286

99.15

0.598
  recA Streptococcus mitis NCTC 12261

60.286

99.15

0.598
  recA Streptococcus pneumoniae R6

59.77

98.584

0.589
  recA Streptococcus pneumoniae D39

59.77

98.584

0.589
  recA Streptococcus pneumoniae Rx1

59.77

98.584

0.589
  recA Streptococcus pneumoniae TIGR4

59.77

98.584

0.589
  recA Helicobacter pylori strain NCTC11637

61.128

95.467

0.584
  recA Helicobacter pylori 26695

60.831

95.467

0.581
  recA Streptococcus pyogenes NZ131

62.769

92.068

0.578
  recA Streptococcus mutans UA159

62.462

92.068

0.575
  recA Lactococcus lactis subsp. cremoris KW2

62.539

91.501

0.572
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.162

92.635

0.567
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

90.935

0.567
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

92.068

0.567
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.94

94.051

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

90.935

0.552

Multiple sequence alignment