Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AV939_RS04775 Genome accession   NZ_CP013932
Coordinates   1150401..1151441 (+) Length   346 a.a.
NCBI ID   WP_057793520.1    Uniprot ID   A0AAW7YVQ6
Organism   Alteromonas sp. Mac1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1145401..1156441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AV939_RS04765 (AV939_04765) mutS 1146732..1149365 (-) 2634 WP_061997234.1 DNA mismatch repair protein MutS -
  AV939_RS04770 (AV939_04770) - 1149658..1150146 (+) 489 WP_061997235.1 CinA family protein -
  AV939_RS04775 (AV939_04775) recA 1150401..1151441 (+) 1041 WP_057793520.1 recombinase RecA Machinery gene
  AV939_RS04780 (AV939_04780) - 1151663..1152469 (+) 807 WP_057793518.1 ATP-binding cassette domain-containing protein -
  AV939_RS04785 (AV939_04785) - 1152453..1153649 (+) 1197 WP_061997236.1 ABC transporter permease -
  AV939_RS04790 (AV939_04790) - 1153751..1154503 (+) 753 WP_061997237.1 hypothetical protein -
  AV939_RS04795 (AV939_04795) - 1154510..1154821 (-) 312 WP_013785237.1 EscU/YscU/HrcU family type III secretion system export apparatus switch protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37218.82 Da        Isoelectric Point: 5.1830

>NTDB_id=166243 AV939_RS04775 WP_057793520.1 1150401..1151441(+) (recA) [Alteromonas sp. Mac1]
MDDNRSKALSAALGQIEKQFGKGAIMRLGDNQAMDIEAISTGSLTIDIALGIGGLPCGRVVEIYGPEASGKTTLTLQVIA
EAQKNGKTCAFVDAEHALDPIYASKLGVNIDELLVSQPDTGEQALEICDMLVRSGGVDVVIVDSVAALTPKAEIEGDMGD
SHVGLQARLMSQALRKLTGNIKRSNTLCIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKEGDEVVGNE
TRVKVVKNKVAPPFKQAEFMIRYGEGISKEAELIDLGVKQKLVDKAGAWYSYKGDRIGQGKANVMKFLKENPAIADEIEK
QIRAELLLPKTVKVEEAPAAEDDAQQ

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=166243 AV939_RS04775 WP_057793520.1 1150401..1151441(+) (recA) [Alteromonas sp. Mac1]
GTGGACGATAACAGATCTAAAGCTTTAAGTGCCGCACTTGGGCAAATTGAAAAGCAGTTCGGCAAAGGCGCAATTATGCG
TTTAGGCGACAACCAAGCGATGGACATTGAGGCTATCTCTACAGGTTCACTAACCATTGATATCGCTTTGGGCATAGGCG
GCTTGCCATGCGGTCGTGTGGTAGAAATTTACGGACCAGAAGCATCGGGTAAAACGACACTTACCTTGCAGGTAATTGCA
GAAGCGCAGAAAAATGGCAAAACCTGTGCCTTCGTAGATGCAGAGCACGCGCTAGACCCTATTTATGCATCAAAACTTGG
TGTGAATATTGATGAGCTTCTAGTCTCTCAGCCTGATACGGGTGAACAAGCCCTTGAAATCTGTGACATGTTGGTTCGCT
CTGGCGGTGTTGATGTAGTAATTGTTGATTCGGTTGCTGCCCTTACGCCAAAAGCAGAAATTGAAGGCGACATGGGTGAC
TCACACGTAGGTTTACAAGCACGATTAATGTCGCAAGCATTGCGTAAGCTTACAGGTAACATCAAGCGTTCAAATACCTT
ATGTATTTTCATTAACCAAATTCGTATGAAAATTGGTGTAATGTTCGGAAGCCCAGAAACAACAACAGGTGGTAACGCTC
TTAAGTTCTACTCCTCAGTACGTTTAGATATCCGTCGTATTGGTGCGGTTAAAGAAGGCGATGAGGTGGTTGGTAATGAA
ACTCGCGTTAAAGTAGTGAAAAACAAAGTGGCACCGCCATTTAAGCAAGCTGAATTCATGATTCGCTATGGTGAAGGTAT
CAGTAAAGAAGCTGAACTTATCGACTTAGGTGTTAAGCAGAAATTGGTTGATAAAGCCGGTGCTTGGTACAGCTATAAAG
GCGACCGAATTGGTCAGGGTAAAGCGAACGTAATGAAGTTCCTGAAAGAAAACCCAGCTATTGCCGATGAGATTGAAAAA
CAAATTCGCGCTGAGCTACTTTTACCTAAAACAGTGAAAGTAGAAGAAGCACCTGCTGCAGAAGATGATGCTCAGCAGTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

76.901

98.844

0.76
  recA Vibrio cholerae strain A1552

74.855

100

0.749
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.855

100

0.749
  recA Acinetobacter baylyi ADP1

72.543

100

0.725
  recA Acinetobacter baumannii D1279779

72.886

99.133

0.723
  recA Neisseria gonorrhoeae MS11

75.077

93.931

0.705
  recA Neisseria gonorrhoeae MS11

75.077

93.931

0.705
  recA Neisseria gonorrhoeae strain FA1090

75.077

93.931

0.705
  recA Glaesserella parasuis strain SC1401

72.84

93.642

0.682
  recA Ralstonia pseudosolanacearum GMI1000

70.427

94.798

0.668
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.667

94.509

0.63
  recA Helicobacter pylori strain NCTC11637

66.667

93.642

0.624
  recA Bacillus subtilis subsp. subtilis str. 168

66.875

92.486

0.618
  recA Helicobacter pylori 26695

66.049

93.642

0.618
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.538

95.665

0.598
  recA Streptococcus mitis SK321

59.184

99.133

0.587
  recA Streptococcus pneumoniae R6

61.89

94.798

0.587
  recA Streptococcus pneumoniae Rx1

61.89

94.798

0.587
  recA Streptococcus pneumoniae D39

61.89

94.798

0.587
  recA Streptococcus pneumoniae TIGR4

61.89

94.798

0.587
  recA Streptococcus mutans UA159

58.721

99.422

0.584
  recA Streptococcus mitis NCTC 12261

61.28

94.798

0.581
  recA Latilactobacillus sakei subsp. sakei 23K

58.358

98.555

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.372

93.353

0.564
  recA Streptococcus pyogenes NZ131

59.146

94.798

0.561
  recA Lactococcus lactis subsp. cremoris KW2

57.716

93.642

0.54

Multiple sequence alignment