Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB663_RS10790 Genome accession   NZ_CP013859
Coordinates   2333823..2334872 (+) Length   349 a.a.
NCBI ID   WP_067198813.1    Uniprot ID   -
Organism   Microbacterium sp. XT11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2328823..2339872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB663_RS10765 (AB663_002211) - 2329076..2331820 (+) 2745 WP_067198801.1 DNA translocase FtsK -
  AB663_RS10770 (AB663_002212) pgsA 2331820..2332395 (+) 576 WP_067198804.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB663_RS10775 (AB663_002213) - 2332392..2332874 (+) 483 WP_067198807.1 CinA family protein -
  AB663_RS10780 (AB663_002214) - 2333016..2333324 (+) 309 WP_067198809.1 helix-turn-helix transcriptional regulator -
  AB663_RS10785 (AB663_002215) - 2333347..2333568 (+) 222 WP_067198811.1 DUF3046 domain-containing protein -
  AB663_RS10790 (AB663_002216) recA 2333823..2334872 (+) 1050 WP_067198813.1 recombinase RecA Machinery gene
  AB663_RS10795 (AB663_002217) - 2334929..2335804 (+) 876 WP_067198815.1 regulatory protein RecX -
  AB663_RS10800 (AB663_002218) miaB 2335871..2337418 (+) 1548 WP_067198817.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  AB663_RS10805 miaA 2337415..2338326 (+) 912 WP_067198820.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  AB663_RS10810 (AB663_002220) - 2338384..2338914 (+) 531 WP_067198822.1 dihydrofolate reductase family protein -
  AB663_RS10815 (AB663_002221) dapF 2338924..2339796 (+) 873 WP_067198824.1 diaminopimelate epimerase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37133.42 Da        Isoelectric Point: 5.3000

>NTDB_id=165277 AB663_RS10790 WP_067198813.1 2333823..2334872(+) (recA) [Microbacterium sp. XT11]
MPSPDDRDKALDSALAQIERQFGKGSIMRLGSDERAPVEVIPTGSIALDVALGIGGLPRGRIIEIYGPESSGKTTLTLHA
IANVQRAGGIAAFVDAEHALDPDYAAKLGVDIDQLLVSQPDTGEQALEIADMLIRSGAIDLVVIDSVAALVPEAEIKGEM
GDSHVGLQARLMSQALRKLTGGLNQTKTTAIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGAEAVG
NRTRVKVVKNKMAPPFKQAEFDILYGIGISREGSLIDFGVEHGIVKKSGSWYTYDGDQLGQGKENARTFLLNNPDIALAI
ETQIKQKLGIGAAPAAAAPADELAERRPA

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=165277 AB663_RS10790 WP_067198813.1 2333823..2334872(+) (recA) [Microbacterium sp. XT11]
ATGCCATCTCCAGACGACCGCGACAAGGCACTGGATTCCGCACTCGCCCAGATCGAACGACAGTTCGGCAAGGGCTCCAT
CATGCGACTGGGCAGCGACGAGCGCGCTCCTGTCGAGGTCATTCCCACGGGGTCCATCGCGCTCGACGTCGCGCTGGGAA
TCGGAGGTCTGCCACGCGGACGCATCATCGAGATCTACGGTCCGGAGTCATCGGGTAAGACCACGCTGACCCTTCATGCC
ATCGCCAACGTCCAGCGGGCCGGCGGCATCGCCGCGTTCGTCGACGCCGAGCACGCTCTCGATCCCGACTACGCCGCGAA
GCTGGGCGTCGACATCGACCAGCTCCTGGTATCGCAGCCCGACACAGGCGAGCAAGCGCTCGAAATCGCCGACATGCTGA
TCCGCTCCGGTGCGATCGATCTCGTGGTCATCGACTCGGTCGCCGCCCTCGTCCCGGAGGCGGAGATCAAGGGCGAGATG
GGCGACTCCCACGTCGGTCTTCAGGCGCGACTGATGTCTCAGGCGCTGCGCAAGCTCACCGGTGGACTCAACCAGACGAA
GACCACTGCGATCTTCATCAACCAGCTGCGCGAGAAGATCGGTGTGTTCTTCGGCTCTCCCGAAACCACCGCCGGTGGTA
AGGCGCTGAAGTTCTACGCCTCGGTTCGTCTCGACATCCGCCGCATCGAGACGCTGAAGGACGGCGCGGAGGCTGTCGGC
AACCGCACTCGCGTGAAGGTGGTCAAGAACAAGATGGCGCCGCCCTTCAAGCAGGCCGAGTTCGACATCCTCTACGGAAT
CGGCATCTCGCGAGAGGGCAGCCTGATCGATTTCGGTGTGGAGCACGGCATCGTGAAGAAGTCCGGCTCCTGGTACACCT
ACGACGGCGATCAGCTGGGTCAGGGCAAGGAGAACGCGCGGACGTTCCTTCTCAACAATCCCGACATCGCGCTGGCCATC
GAGACGCAGATCAAGCAGAAGCTCGGCATCGGCGCCGCTCCGGCGGCCGCGGCGCCCGCGGATGAGCTCGCGGAGAGGCG
TCCAGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

65.789

97.994

0.645
  recA Bacillus subtilis subsp. subtilis str. 168

68.615

93.123

0.639
  recA Acinetobacter baylyi ADP1

65.103

97.708

0.636
  recA Neisseria gonorrhoeae MS11

64.348

98.854

0.636
  recA Neisseria gonorrhoeae MS11

64.348

98.854

0.636
  recA Neisseria gonorrhoeae strain FA1090

64.348

98.854

0.636
  recA Acinetobacter baumannii D1279779

64.793

96.848

0.628
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.049

92.837

0.613
  recA Vibrio cholerae strain A1552

66.049

92.837

0.613
  recA Ralstonia pseudosolanacearum GMI1000

67.732

89.685

0.607
  recA Streptococcus mitis NCTC 12261

60.87

98.854

0.602
  recA Streptococcus mitis SK321

60.87

98.854

0.602
  recA Helicobacter pylori strain NCTC11637

60.345

99.713

0.602
  recA Helicobacter pylori 26695

60.345

99.713

0.602
  recA Latilactobacillus sakei subsp. sakei 23K

61.834

96.848

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.609

93.696

0.596
  recA Streptococcus pneumoniae Rx1

62.918

94.269

0.593
  recA Streptococcus pneumoniae D39

62.918

94.269

0.593
  recA Streptococcus pneumoniae R6

62.918

94.269

0.593
  recA Streptococcus pneumoniae TIGR4

62.918

94.269

0.593
  recA Lactococcus lactis subsp. cremoris KW2

62.31

94.269

0.587
  recA Streptococcus mutans UA159

61.818

94.556

0.585
  recA Glaesserella parasuis strain SC1401

62.769

93.123

0.585
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.961

95.415

0.582
  recA Streptococcus pyogenes NZ131

61.398

94.269

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.75

91.691

0.539

Multiple sequence alignment