Detailed information NTG0164536

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: RD2015_RS23500
• Genome accession: NZ_CP013729
• Coordinates: 5516837..5517880 (-)
• Length: 347 a.a.
• NCBI ID: WP_058936972.1
• Uniprot ID: A0A0U3MKX1
• Organism: Roseateles depolymerans strain KCTC 42856
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	5505246..5515947	5516837..5517880	flank	890

Gene organization within MGE regions

Location: 5505246..5517880

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RD2015_RS23440 (RD2015_4692)	tfpZ	5505246..5505998 (-)	753	WP_147307143.1	TfpX/TfpZ family type IV pilin accessory protein	-
RD2015_RS23445 (RD2015_4693)	-	5506003..5507439 (-)	1437	WP_058936961.1	O-antigen ligase family protein	-
RD2015_RS23450 (RD2015_4694)	-	5507530..5507967 (-)	438	WP_058936962.1	pilin	-
RD2015_RS26200 (RD2015_4695)	-	5508198..5508650 (-)	453	WP_058936963.1	pilin	-
RD2015_RS23460 (RD2015_4696)	-	5508980..5509762 (-)	783	WP_058936964.1	MBL fold metallo-hydrolase	-
RD2015_RS23465 (RD2015_4697)	-	5509984..5510649 (-)	666	WP_058936965.1	FHA domain-containing protein	-
RD2015_RS23470 (RD2015_4698)	-	5510689..5511483 (-)	795	WP_058936966.1	Stp1/IreP family PP2C-type Ser/Thr phosphatase	-
RD2015_RS23475 (RD2015_4699)	-	5511480..5512607 (-)	1128	WP_058936967.1	serine/threonine-protein kinase	-
RD2015_RS23480 (RD2015_4700)	-	5512626..5513357 (-)	732	WP_058936968.1	TerC family protein	-
RD2015_RS23485 (RD2015_4701)	sucD	5513550..5514443 (-)	894	WP_058936969.1	succinate--CoA ligase subunit alpha	-
RD2015_RS23490 (RD2015_4702)	sucC	5514471..5515631 (-)	1161	WP_058936970.1	ADP-forming succinate--CoA ligase subunit beta	-
RD2015_RS23495 (RD2015_4704)	-	5516111..5516827 (-)	717	WP_058936971.1	regulatory protein RecX	-
RD2015_RS23500 (RD2015_4705)	recA	5516837..5517880 (-)	1044	WP_058936972.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 347 a.a.
• Molecular weight: 37178.95 Da
• Isoelectric Point: 5.1716

>NTDB_id=164536 RD2015_RS23500 WP_058936972.1 5516837..5517880(-) (recA) [Roseateles depolymerans strain KCTC 42856]
MDAPVKNANTEKAKALQAALAQIEKQFGKGSIMRLAEGEKIEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKT
TLTLQVIAQMQKLQGVCAFIDAEHALDVQYAQKLGVNLQEMLISQPDTGEQALEIVDALVRSGSVDLIIIDSVAALTPKA
ELEGEMGDALPGLQARLMSQALRKLTATIKKTNCTVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKK
GEEVIGSETKVKVVKNKVAPPFKTAEFDILYGEGISREGEIIDMGVTAKIVDKAGAWYAYNGEKIGQGKDNAREFLRENA
DLAVEIENKIRDSLGIPLLGAVPDAAQ

Nucleotide

• Length: 1044 bp

>NTDB_id=164536 RD2015_RS23500 WP_058936972.1 5516837..5517880(-) (recA) [Roseateles depolymerans strain KCTC 42856]
ATGGACGCCCCCGTCAAAAACGCCAATACTGAAAAAGCCAAGGCCCTGCAGGCCGCTCTCGCCCAGATCGAAAAGCAGTT
CGGCAAGGGCTCCATCATGCGCCTGGCGGAAGGCGAGAAGATCGAGGACATCCAGGTCGTCTCCACCGGCTCGCTGGGCC
TGGACATCGCCCTGGGCGTGGGCGGTCTGCCCCGTGGCCGCGTGATCGAGATCTACGGCCCTGAATCGTCGGGCAAGACC
ACGCTCACGCTGCAGGTCATCGCCCAGATGCAGAAGCTGCAAGGCGTGTGCGCCTTCATCGACGCCGAGCATGCGCTGGA
CGTCCAGTACGCCCAGAAGCTGGGTGTGAACCTGCAGGAAATGCTGATCAGCCAGCCGGACACCGGTGAACAGGCGCTCG
AGATCGTGGACGCCCTGGTGCGCTCCGGCTCGGTGGACCTGATCATCATCGACTCGGTCGCTGCCCTGACGCCCAAGGCC
GAACTCGAAGGCGAGATGGGCGACGCATTGCCCGGCCTGCAGGCCCGACTGATGAGCCAGGCCCTGCGCAAGCTGACCGC
CACCATCAAGAAGACCAACTGCACCGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCTCGCCCG
AAACCACCACCGGCGGCAATGCGCTGAAGTTCTATGCGTCGGTCCGTCTGGACATCCGCCGCATCGGCTCCATCAAGAAG
GGTGAAGAAGTCATCGGTTCGGAAACCAAGGTCAAGGTGGTGAAGAACAAGGTGGCGCCCCCGTTCAAGACGGCAGAGTT
CGACATCCTCTACGGCGAAGGCATCAGCCGCGAAGGCGAAATCATCGACATGGGCGTGACCGCGAAGATCGTGGACAAGG
CCGGCGCCTGGTATGCCTACAACGGCGAGAAGATCGGCCAGGGCAAGGACAACGCTCGTGAGTTCCTGCGTGAGAACGCG
GACCTGGCGGTCGAGATCGAAAACAAGATCCGCGATTCGCTGGGCATCCCGCTGCTGGGCGCTGTTCCGGACGCTGCGCA
GTAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (14-276)

3D structure

• AlphaFold DB: A0A0U3MKX1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Ralstonia pseudosolanacearum GMI1000	82.812	92.219	0.764
recA	Neisseria gonorrhoeae MS11	71.341	94.524	0.674
recA	Neisseria gonorrhoeae MS11	71.341	94.524	0.674
recA	Neisseria gonorrhoeae strain FA1090	71.341	94.524	0.674
recA	Pseudomonas stutzeri DSM 10701	71.166	93.948	0.669
recA	Glaesserella parasuis strain SC1401	71.605	93.372	0.669
recA	Acinetobacter baumannii D1279779	71.207	93.084	0.663
recA	Acinetobacter baylyi ADP1	70.898	93.084	0.66
recA	Vibrio cholerae strain A1552	69.018	93.948	0.648
recA	Vibrio cholerae O1 biovar El Tor strain E7946	69.018	93.948	0.648
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	65.653	94.813	0.622
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	63.964	95.965	0.614
recA	Helicobacter pylori 26695	64.939	94.524	0.614
recA	Bacillus subtilis subsp. subtilis str. 168	63.772	96.254	0.614
recA	Helicobacter pylori strain NCTC11637	64.634	94.524	0.611
recA	Streptococcus mutans UA159	59.941	97.118	0.582
recA	Streptococcus pyogenes NZ131	60.119	96.83	0.582
recA	Lactococcus lactis subsp. cremoris KW2	59.118	97.983	0.579
recA	Latilactobacillus sakei subsp. sakei 23K	60.909	95.101	0.579
recA	Streptococcus mitis SK321	58.944	98.271	0.579
recA	Streptococcus mitis NCTC 12261	58.944	98.271	0.579
recA	Streptococcus pneumoniae TIGR4	59.821	96.83	0.579
recA	Streptococcus pneumoniae R6	59.821	96.83	0.579
recA	Streptococcus pneumoniae Rx1	59.821	96.83	0.579
recA	Streptococcus pneumoniae D39	59.821	96.83	0.579
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	59.813	92.507	0.553