Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AT984_RS17575 Genome accession   NZ_CP013692
Coordinates   4108030..4109070 (+) Length   346 a.a.
NCBI ID   WP_058721214.1    Uniprot ID   A0A0U3EM05
Organism   Paucibacter sp. KCTC 42545     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4103030..4114070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT984_RS17560 (AT984_17560) rodA 4104474..4105628 (+) 1155 WP_058721211.1 rod shape-determining protein RodA -
  AT984_RS17565 (AT984_17565) - 4105665..4107176 (-) 1512 WP_058721212.1 sensor histidine kinase -
  AT984_RS17570 (AT984_17570) - 4107207..4107878 (-) 672 WP_058721213.1 response regulator transcription factor -
  AT984_RS17575 (AT984_17575) recA 4108030..4109070 (+) 1041 WP_058721214.1 recombinase RecA Machinery gene
  AT984_RS17580 (AT984_17580) - 4109141..4109515 (+) 375 WP_058721215.1 nuclear transport factor 2 family protein -
  AT984_RS17585 (AT984_17585) - 4109601..4110176 (+) 576 WP_058721216.1 regulatory protein RecX -
  AT984_RS17590 (AT984_17590) - 4110349..4110954 (+) 606 WP_058721217.1 DUF2889 domain-containing protein -
  AT984_RS17595 (AT984_17595) sucC 4110980..4112140 (+) 1161 WP_058721218.1 ADP-forming succinate--CoA ligase subunit beta -
  AT984_RS17600 (AT984_17600) sucD 4112214..4113107 (+) 894 WP_058721219.1 succinate--CoA ligase subunit alpha -
  AT984_RS17605 (AT984_17605) - 4113245..4113988 (+) 744 WP_058721220.1 TerC family protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37048.67 Da        Isoelectric Point: 5.0512

>NTDB_id=164107 AT984_RS17575 WP_058721214.1 4108030..4109070(+) (recA) [Paucibacter sp. KCTC 42545]
MDAPVKPTISAEKAKALQAALSQIEKQFGKGSIMRLGEGEVIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK
TTLTLQVIAEMQKVNGVCAFIDAEHALDIQYAQKLGVNLQDLLISQPDTGEQALEIVDALVRSGSVDLIVVDSVAALTPK
AELEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIK
KGDEVIGSETKVKVVKNKVASPFKTAEFDILYGEGISREGEIIDMGVVAKVVEKSGSWYAYNGEKIGQGKDNAREFLREN
SDIAREIENKVRDSLGVPLLAGAQAE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=164107 AT984_RS17575 WP_058721214.1 4108030..4109070(+) (recA) [Paucibacter sp. KCTC 42545]
ATGGACGCCCCAGTCAAACCCACCATCAGTGCTGAAAAAGCCAAGGCCTTGCAGGCCGCCCTGTCGCAGATCGAAAAGCA
ATTCGGCAAGGGTTCCATCATGCGCCTGGGCGAGGGCGAGGTGATTGAAGACATCCAGGTGGTGTCCACCGGTTCGCTGG
GTCTGGACATTGCCCTGGGCGTTGGCGGCCTGCCGCGCGGCCGTGTGGTCGAAATCTACGGCCCTGAGTCTTCGGGCAAG
ACCACCCTGACCCTGCAAGTCATCGCTGAGATGCAAAAGGTCAACGGCGTCTGCGCCTTCATCGACGCCGAGCACGCCCT
GGACATCCAGTACGCACAAAAGCTGGGCGTCAATCTGCAAGACCTCTTGATCAGCCAGCCCGACACCGGCGAGCAAGCCC
TGGAAATCGTTGACGCGCTGGTGCGCTCCGGCTCCGTGGACCTGATCGTCGTCGACTCGGTGGCAGCGCTGACGCCCAAG
GCCGAGCTGGAAGGCGAAATGGGCGATTCATTGCCTGGCCTGCAAGCCCGCTTGATGAGCCAGGCCCTGCGCAAGCTGAC
GGCCACCATCAAGAAGACCAATTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCC
CCGAAACCACCACCGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATCGGCTCGATCAAG
AAGGGCGATGAAGTCATCGGCAGTGAAACCAAGGTCAAGGTGGTGAAGAACAAGGTGGCCTCTCCCTTCAAGACCGCCGA
GTTCGACATCCTCTACGGCGAAGGCATCAGCCGTGAAGGCGAGATCATCGACATGGGCGTGGTAGCCAAGGTGGTCGAAA
AGTCCGGATCCTGGTACGCCTACAACGGCGAGAAGATCGGCCAGGGCAAGGACAACGCCCGCGAATTCCTGCGCGAAAAC
AGCGACATCGCCCGCGAAATCGAGAACAAGGTGCGTGACTCGCTGGGTGTTCCGCTGCTGGCGGGCGCCCAAGCCGAGTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U3EM05

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.235

98.266

0.818
  recA Pseudomonas stutzeri DSM 10701

73.065

93.353

0.682
  recA Glaesserella parasuis strain SC1401

71.299

95.665

0.682
  recA Neisseria gonorrhoeae MS11

70.997

95.665

0.679
  recA Neisseria gonorrhoeae MS11

70.997

95.665

0.679
  recA Neisseria gonorrhoeae strain FA1090

70.997

95.665

0.679
  recA Acinetobacter baylyi ADP1

72.446

93.353

0.676
  recA Acinetobacter baumannii D1279779

72.136

93.353

0.673
  recA Vibrio cholerae strain A1552

71.166

94.22

0.671
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.166

94.22

0.671
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.957

95.087

0.627
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.671

96.532

0.624
  recA Bacillus subtilis subsp. subtilis str. 168

65.138

94.509

0.616
  recA Helicobacter pylori 26695

64.134

95.087

0.61
  recA Helicobacter pylori strain NCTC11637

63.83

95.087

0.607
  recA Latilactobacillus sakei subsp. sakei 23K

62.883

94.22

0.592
  recA Lactococcus lactis subsp. cremoris KW2

60.423

95.665

0.578
  recA Streptococcus pneumoniae Rx1

60.423

95.665

0.578
  recA Streptococcus pneumoniae D39

60.423

95.665

0.578
  recA Streptococcus pneumoniae R6

60.423

95.665

0.578
  recA Streptococcus pneumoniae TIGR4

60.423

95.665

0.578
  recA Streptococcus mutans UA159

60.606

95.376

0.578
  recA Streptococcus mitis NCTC 12261

59.05

97.399

0.575
  recA Streptococcus mitis SK321

58.754

97.399

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.736

94.22

0.572
  recA Streptococcus pyogenes NZ131

60.182

95.087

0.572

Multiple sequence alignment