Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AU077_RS00040 Genome accession   NZ_CP013688
Coordinates   9327..10481 (+) Length   384 a.a.
NCBI ID   WP_039671314.1    Uniprot ID   A0A380K1M8
Organism   Streptococcus gallolyticus strain ICDDRB-NRC-S1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4327..15481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AU077_RS00015 (AU077_00015) ruvA 4474..5067 (+) 594 WP_058621320.1 Holliday junction branch migration protein RuvA -
  AU077_RS00020 (AU077_00020) - 5172..5828 (-) 657 WP_230937560.1 XRE family transcriptional regulator -
  AU077_RS11260 - 6089..6232 (+) 144 WP_014295455.1 hypothetical protein -
  AU077_RS00025 (AU077_00025) - 6251..6553 (+) 303 WP_014295454.1 hypothetical protein -
  AU077_RS11125 - 6603..6776 (+) 174 WP_196479519.1 hypothetical protein -
  AU077_RS11265 - 7266..7445 (+) 180 WP_230937561.1 hypothetical protein -
  AU077_RS11270 - 7461..7841 (+) 381 WP_230937562.1 hypothetical protein -
  AU077_RS11870 (AU077_00035) - 8028..9277 (+) 1250 Protein_10 competence/damage-inducible protein A -
  AU077_RS00040 (AU077_00040) recA 9327..10481 (+) 1155 WP_039671314.1 recombinase RecA Machinery gene
  AU077_RS00045 (AU077_00045) spx 10750..11148 (+) 399 WP_058621321.1 transcriptional regulator Spx -
  AU077_RS00050 (AU077_00050) - 11470..11739 (+) 270 WP_003066890.1 IreB family regulatory phosphoprotein -
  AU077_RS00055 (AU077_00055) ruvX 11736..12155 (+) 420 WP_006531414.1 Holliday junction resolvase RuvX -
  AU077_RS00060 (AU077_00060) - 12188..12505 (+) 318 WP_006531413.1 DUF1292 domain-containing protein -
  AU077_RS00065 (AU077_00065) - 12769..14358 (+) 1590 WP_058621322.1 hypothetical protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41263.84 Da        Isoelectric Point: 4.8577

>NTDB_id=164028 AU077_RS00040 WP_039671314.1 9327..10481(+) (recA) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
MAKKTKKTEAITKKFGDERKKALDDALKLIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRSEIDGDIGDNHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGSGDQKDSNIGKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTGELVKIASDLDIIKKAGAWFSYNGEKIGQGSE
NAKKYLAEHPEVFDEIDHKVRVHYGLVEETEDEKAADIVEESAATNDNVDEVVLDLDDAIEIEE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=164028 AU077_RS00040 WP_039671314.1 9327..10481(+) (recA) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
TTGGCTAAGAAGACAAAGAAAACAGAAGCTATCACTAAAAAATTTGGTGATGAGCGTAAAAAGGCACTTGATGATGCCTT
GAAATTAATTGAAAAAGATTTCGGTAAGGGAGCTGTTATGCGCCTTGGTGAACGTGCTGAACAAAAAGTTCAAGTCATGA
GTTCAGGTAGCTTGGCTCTTGATATTGCTTTGGGTGCAGGTGGTTATCCTAAAGGGCGTATCATTGAAATCTATGGACCT
GAAAGTTCTGGTAAGACAACTGTTGCGCTTCATGCGGTAGCACAAGCTCAAAAAGAAGGTGGAATTGCTGCCTTTATCGA
TGCCGAACACGCACTTGACCCAGCTTATGCTGCGGCTCTTGGTGTTAACATTGATGAGCTTCTCTTGTCACAACCTGACT
CTGGGGAACAAGGTCTTGAAATTGCAGGAAAATTGATTGACTCAGGTGCTGTTGACCTCGTCGTTGTCGATTCTGTTGCT
GCCCTTGTACCTCGTTCCGAAATCGATGGTGACATTGGTGATAATCACGTTGGTTTGCAAGCTCGTATGATGAGTCAAGC
AATGCGTAAATTGTCAGCTTCAATCAACAAAACAAAAACAATTGCGATTTTCATCAACCAGTTGCGTGAAAAAGTTGGTG
TGATGTTTGGTAACCCAGAAACAACACCTGGTGGACGCGCGCTTAAGTTCTATGCGTCAGTTCGTCTTGATGTCCGTGGT
AACACACAAATCAAAGGTTCTGGTGACCAAAAAGATAGCAATATTGGTAAAGAAACTAAAATCAAAGTGGTTAAAAACAA
AGTTGCGCCACCATTTAAAACAGCCGAAGTTGAAATTATGTATGGTGAGGGAATTTCACGTACGGGTGAGCTTGTTAAGA
TTGCTAGCGACTTAGACATCATCAAAAAAGCAGGTGCTTGGTTCTCGTATAACGGTGAGAAAATCGGACAAGGTTCTGAA
AATGCGAAGAAATACTTGGCAGAACACCCAGAAGTCTTTGATGAAATCGACCACAAAGTACGTGTTCACTACGGTCTCGT
AGAAGAAACCGAAGATGAGAAAGCAGCAGATATTGTTGAAGAATCAGCAGCAACTAATGATAATGTTGACGAGGTTGTTC
TTGATTTAGATGATGCTATCGAAATCGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380K1M8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

88.802

100

0.888
  recA Streptococcus mutans UA159

87.047

100

0.875
  recA Streptococcus mitis NCTC 12261

85.938

100

0.859
  recA Streptococcus mitis SK321

85.938

100

0.859
  recA Streptococcus pneumoniae Rx1

85.052

100

0.859
  recA Streptococcus pneumoniae D39

85.052

100

0.859
  recA Streptococcus pneumoniae R6

85.052

100

0.859
  recA Streptococcus pneumoniae TIGR4

85.052

100

0.859
  recA Lactococcus lactis subsp. cremoris KW2

78.857

91.146

0.719
  recA Latilactobacillus sakei subsp. sakei 23K

66.301

95.052

0.63
  recA Bacillus subtilis subsp. subtilis str. 168

68.389

85.677

0.586
  recA Acinetobacter baumannii D1279779

59.207

91.927

0.544
  recA Neisseria gonorrhoeae strain FA1090

59.714

91.146

0.544
  recA Neisseria gonorrhoeae MS11

59.714

91.146

0.544
  recA Neisseria gonorrhoeae MS11

59.714

91.146

0.544
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.767

88.281

0.536
  recA Glaesserella parasuis strain SC1401

60.294

88.542

0.534
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.158

84.115

0.531
  recA Acinetobacter baylyi ADP1

59.706

88.542

0.529
  recA Vibrio cholerae strain A1552

57.062

92.188

0.526
  recA Vibrio cholerae O1 biovar El Tor strain E7946

57.062

92.188

0.526
  recA Pseudomonas stutzeri DSM 10701

56.772

90.365

0.513
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.912

86.198

0.508
  recA Helicobacter pylori 26695

57.784

86.979

0.503
  recA Helicobacter pylori strain NCTC11637

57.784

86.979

0.503
  recA Ralstonia pseudosolanacearum GMI1000

59.306

82.552

0.49

Multiple sequence alignment