Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ATE47_RS12720 Genome accession   NZ_CP013293
Coordinates   2748584..2749591 (+) Length   335 a.a.
NCBI ID   WP_062162325.1    Uniprot ID   -
Organism   Chryseobacterium sp. IHB B 17019     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2743584..2754591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATE47_RS12700 (ATE47_12690) - 2744506..2744970 (+) 465 WP_062162321.1 hypothetical protein -
  ATE47_RS12705 (ATE47_12695) - 2744983..2745786 (-) 804 WP_062162322.1 hypothetical protein -
  ATE47_RS12710 (ATE47_12700) - 2746148..2746927 (+) 780 WP_062162323.1 helix-turn-helix transcriptional regulator -
  ATE47_RS12715 (ATE47_12705) - 2747091..2748287 (+) 1197 WP_062162324.1 oxygenase MpaB family protein -
  ATE47_RS12720 (ATE47_12710) recA 2748584..2749591 (+) 1008 WP_062162325.1 recombinase RecA Machinery gene
  ATE47_RS12725 (ATE47_12715) htpG 2749873..2751765 (+) 1893 WP_062162326.1 molecular chaperone HtpG -
  ATE47_RS12730 (ATE47_12720) - 2751878..2752174 (-) 297 WP_062162327.1 MGMT family protein -
  ATE47_RS19275 - 2752375..2752521 (+) 147 WP_181897991.1 hypothetical protein -
  ATE47_RS12735 (ATE47_12725) - 2752786..2753760 (-) 975 WP_062162328.1 deoxyhypusine synthase family protein -
  ATE47_RS12740 (ATE47_12730) - 2753858..2754232 (-) 375 WP_062162329.1 GreA/GreB family elongation factor -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36005.37 Da        Isoelectric Point: 5.8993

>NTDB_id=161574 ATE47_RS12720 WP_062162325.1 2748584..2749591(+) (recA) [Chryseobacterium sp. IHB B 17019]
MSNIDDKKKALALVLDKLDKTYGKGTVMTLGDNSVDNTIEVIPSGSLGLDIALGVGGYPRGRIIEIYGPESSGKTTLTLH
AIAEAQKAGGIAAFIDAEHAFDRGYAGKLGIDLENLIISQPDNGEQALEIADNLIRSGAIDIVVIDSVAALTPKAEIEGE
MGDSKMGLHARLMSQALRKLTATISRTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRVDIRKASAPIKNGDEA
IGSRVKVKIVKNKVAPPFKMAEFDIMYGEGVSKTGEILDQAVELGIVKKSGSWFSYEETKLGQGRDAVKDVLKDNPELAE
ELENKIKEELKNKAK

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=161574 ATE47_RS12720 WP_062162325.1 2748584..2749591(+) (recA) [Chryseobacterium sp. IHB B 17019]
ATGAGTAACATAGACGATAAGAAAAAAGCACTCGCTTTAGTGCTTGACAAACTAGATAAAACATACGGAAAAGGGACGGT
AATGACGCTGGGAGACAACTCAGTAGACAATACAATAGAGGTGATTCCTTCAGGATCTTTAGGATTAGACATCGCTCTTG
GAGTGGGCGGTTATCCGAGAGGAAGAATCATCGAAATCTACGGCCCGGAATCTTCAGGTAAAACAACTTTAACACTTCAC
GCCATCGCAGAAGCTCAGAAGGCAGGAGGAATTGCAGCATTTATCGATGCAGAGCACGCTTTCGACAGAGGATATGCAGG
AAAACTGGGAATTGACCTGGAAAACCTTATTATTTCACAACCGGATAACGGTGAGCAGGCATTAGAAATTGCTGATAACT
TAATCCGTTCAGGAGCTATTGATATCGTGGTAATTGACTCTGTTGCAGCACTTACTCCAAAAGCTGAGATCGAAGGTGAA
ATGGGAGACTCCAAAATGGGTCTTCATGCAAGGTTGATGTCTCAGGCTTTGAGAAAACTGACAGCAACTATTTCAAGAAC
AAAATGTACGGTAATCTTCATCAACCAGTTGAGAGAGAAAATCGGGGTAATGTTCGGGAATCCGGAAACGACAACAGGTG
GTAACGCATTGAAATTCTACGCTTCAGTAAGAGTTGATATTAGAAAAGCAAGTGCGCCGATCAAAAACGGAGATGAAGCC
ATTGGAAGCCGTGTAAAAGTGAAGATCGTGAAAAACAAGGTAGCTCCACCTTTCAAAATGGCAGAATTCGACATCATGTA
TGGTGAAGGAGTTTCCAAAACAGGAGAGATTCTTGATCAGGCGGTAGAATTAGGAATTGTGAAGAAAAGCGGTTCTTGGT
TCAGCTACGAAGAAACAAAACTTGGACAAGGTCGTGACGCCGTAAAAGACGTGTTAAAAGACAATCCTGAACTTGCTGAA
GAATTGGAAAACAAAATTAAAGAAGAATTGAAGAATAAAGCTAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

80.48

99.403

0.8
  recA Acinetobacter baylyi ADP1

64.848

98.507

0.639
  recA Acinetobacter baumannii D1279779

64.724

97.313

0.63
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.22

97.612

0.627
  recA Glaesserella parasuis strain SC1401

64.11

97.313

0.624
  recA Ralstonia pseudosolanacearum GMI1000

66.454

93.433

0.621
  recA Helicobacter pylori 26695

62.997

97.612

0.615
  recA Helicobacter pylori strain NCTC11637

62.997

97.612

0.615
  recA Bacillus subtilis subsp. subtilis str. 168

62.883

97.313

0.612
  recA Neisseria gonorrhoeae strain FA1090

62.848

96.418

0.606
  recA Neisseria gonorrhoeae MS11

62.848

96.418

0.606
  recA Neisseria gonorrhoeae MS11

62.848

96.418

0.606
  recA Pseudomonas stutzeri DSM 10701

61.043

97.313

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.366

97.91

0.591
  recA Vibrio cholerae strain A1552

60.366

97.91

0.591
  recA Streptococcus pyogenes NZ131

60.123

97.313

0.585
  recA Lactococcus lactis subsp. cremoris KW2

60.123

97.313

0.585
  recA Latilactobacillus sakei subsp. sakei 23K

60.372

96.418

0.582
  recA Streptococcus mitis NCTC 12261

60

97.015

0.582
  recA Streptococcus mitis SK321

60

97.015

0.582
  recA Streptococcus mutans UA159

59.202

97.313

0.576
  recA Streptococcus pneumoniae Rx1

58.841

97.91

0.576
  recA Streptococcus pneumoniae D39

58.841

97.91

0.576
  recA Streptococcus pneumoniae R6

58.841

97.91

0.576
  recA Streptococcus pneumoniae TIGR4

58.841

97.91

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.308

97.015

0.546

Multiple sequence alignment