Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CPter291_RS21640 Genome accession   NZ_CP013236
Coordinates   4837148..4838269 (-) Length   373 a.a.
NCBI ID   WP_061943931.1    Uniprot ID   A0A127QAD6
Organism   Collimonas pratensis strain Ter291     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4832148..4843269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPter291_RS21610 (CPter291_4570) - 4832199..4833026 (-) 828 WP_335340348.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  CPter291_RS21615 (CPter291_4571) sucD 4833208..4834089 (-) 882 WP_062119005.1 succinate--CoA ligase subunit alpha -
  CPter291_RS21620 (CPter291_4572) - 4834136..4834405 (-) 270 WP_231879981.1 GIY-YIG nuclease family protein -
  CPter291_RS21625 (CPter291_4573) sucC 4834468..4835658 (-) 1191 WP_257722470.1 ADP-forming succinate--CoA ligase subunit beta -
  CPter291_RS21630 (CPter291_4574) - 4835655..4836260 (-) 606 WP_062119012.1 DUF2889 domain-containing protein -
  CPter291_RS21635 (CPter291_4575) recX 4836518..4836979 (-) 462 WP_062119015.1 recombination regulator RecX -
  CPter291_RS21640 (CPter291_4576) recA 4837148..4838269 (-) 1122 WP_061943931.1 recombinase RecA Machinery gene
  CPter291_RS21645 (CPter291_4578) ggt 4838795..4840456 (+) 1662 WP_231880149.1 gamma-glutamyltransferase -
  CPter291_RS21650 (CPter291_4579) - 4840708..4841757 (+) 1050 WP_062119021.1 DUF1338 domain-containing protein -
  CPter291_RS21655 (CPter291_4580) - 4841781..4843199 (+) 1419 WP_062119024.1 FAD-binding oxidoreductase -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 39465.02 Da        Isoelectric Point: 5.3835

>NTDB_id=160949 CPter291_RS21640 WP_061943931.1 4837148..4838269(-) (recA) [Collimonas pratensis strain Ter291]
MDDKKSAVNPDKSKALAAALAQIEKQFGKGSVMRMDDGAVVEEVQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT
TLTLQTIAEMQKLGGTCAFIDAEHALDVGYAQKLGINLSELLISQPDTGEQALEITDALVRSGGVDLIVIDSVAALTPRA
EIEGDMGDSLPGLQARLMSQALRKLTGSINRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKS
GDEVIGNETKVKVVKNKIAPPFKEAHFDILYGEGTSREGEILDLGSDAKIVEKSGAWYSYNGERIGQGKDNARTYLKERP
ELAREIENKVRASLGVPLLGEIKAAEGGDKADKAAAKANKAAAAAAAKAEEPV

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=160949 CPter291_RS21640 WP_061943931.1 4837148..4838269(-) (recA) [Collimonas pratensis strain Ter291]
ATGGACGATAAAAAATCCGCCGTCAACCCGGATAAAAGCAAGGCCCTTGCCGCGGCCTTGGCGCAGATCGAAAAGCAGTT
CGGCAAAGGTTCGGTCATGCGGATGGACGACGGCGCCGTGGTCGAAGAAGTGCAAGTGGTCTCGACCGGCTCGCTCGGCC
TGGACATCGCACTCGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGGTTGAAATCTACGGTCCGGAATCCTCCGGCAAGACC
ACGCTGACCCTGCAAACCATCGCCGAAATGCAAAAGCTGGGCGGCACCTGCGCCTTCATCGATGCGGAACACGCGCTGGA
CGTCGGCTATGCCCAGAAACTGGGCATCAATCTGTCCGAACTGCTGATCTCGCAGCCGGATACCGGCGAACAGGCGCTGG
AAATCACCGATGCGCTGGTGCGCTCCGGCGGCGTCGACCTGATCGTCATCGACTCGGTGGCGGCCTTGACGCCACGCGCT
GAAATCGAAGGCGACATGGGCGATTCACTGCCTGGCCTGCAAGCGCGCCTGATGTCGCAAGCGCTGCGCAAGCTGACCGG
CAGCATCAACCGCACCAACACCCTGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCGGCAATCCGG
AAACCACCACCGGCGGCAATGCCCTCAAGTTCTACGCTTCGGTGCGCCTTGACATTCGCCGCACCGGCTCGATCAAGTCC
GGCGACGAAGTCATCGGCAACGAAACCAAGGTCAAGGTCGTCAAGAACAAGATCGCGCCGCCATTCAAGGAAGCGCACTT
CGACATCCTGTATGGCGAAGGCACATCGCGCGAAGGTGAAATCCTCGATCTCGGTTCCGATGCCAAGATCGTTGAAAAGT
CGGGCGCCTGGTACAGCTACAACGGCGAACGCATCGGCCAGGGCAAGGACAATGCACGCACCTACCTGAAAGAACGTCCG
GAACTGGCGCGCGAGATCGAAAACAAGGTACGCGCATCGCTGGGCGTGCCGCTGCTGGGCGAGATCAAGGCCGCCGAGGG
TGGCGACAAGGCTGACAAAGCCGCCGCCAAGGCCAATAAAGCTGCTGCAGCCGCGGCTGCCAAGGCTGAAGAGCCGGTCT
AA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A127QAD6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.609

93.298

0.761
  recA Neisseria gonorrhoeae MS11

73.476

87.936

0.646
  recA Neisseria gonorrhoeae MS11

73.476

87.936

0.646
  recA Neisseria gonorrhoeae strain FA1090

73.476

87.936

0.646
  recA Vibrio cholerae strain A1552

71.515

88.472

0.633
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.515

88.472

0.633
  recA Glaesserella parasuis strain SC1401

71.037

87.936

0.625
  recA Pseudomonas stutzeri DSM 10701

71.254

87.668

0.625
  recA Acinetobacter baylyi ADP1

70.948

87.668

0.622
  recA Acinetobacter baumannii D1279779

70.642

87.668

0.619
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.976

88.74

0.603
  recA Helicobacter pylori 26695

64.242

88.472

0.568
  recA Helicobacter pylori strain NCTC11637

63.939

88.472

0.566
  recA Bacillus subtilis subsp. subtilis str. 168

64.417

87.399

0.563
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

88.472

0.563
  recA Streptococcus pyogenes NZ131

63.526

88.204

0.56
  recA Streptococcus pneumoniae Rx1

63.03

88.472

0.558
  recA Streptococcus pneumoniae R6

63.03

88.472

0.558
  recA Streptococcus pneumoniae TIGR4

63.03

88.472

0.558
  recA Streptococcus pneumoniae D39

63.03

88.472

0.558
  recA Streptococcus mitis SK321

61.176

91.153

0.558
  recA Streptococcus mitis NCTC 12261

61.176

91.153

0.558
  recA Streptococcus mutans UA159

62.727

88.472

0.555
  recA Lactococcus lactis subsp. cremoris KW2

60.588

91.153

0.552
  recA Latilactobacillus sakei subsp. sakei 23K

62.883

87.399

0.55
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.462

87.131

0.544

Multiple sequence alignment