Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CPter91_RS21440 Genome accession   NZ_CP013234
Coordinates   4817215..4818336 (-) Length   373 a.a.
NCBI ID   WP_061943931.1    Uniprot ID   A0A127QAD6
Organism   Collimonas pratensis strain Ter91     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4819036..4851231 4817215..4818336 flank 700


Gene organization within MGE regions


Location: 4817215..4851231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPter91_RS21440 (CPter91_4662) recA 4817215..4818336 (-) 1122 WP_061943931.1 recombinase RecA Machinery gene
  CPter91_RS21445 (CPter91_4663) - 4819036..4820754 (+) 1719 WP_082793129.1 alpha,alpha-trehalose-phosphate synthase (UDP-forming) -
  CPter91_RS21450 - 4820891..4821139 (-) 249 WP_061943936.1 DUF7706 family protein -
  CPter91_RS26710 - 4821488..4821694 (+) 207 WP_150119775.1 hypothetical protein -
  CPter91_RS21455 - 4821847..4822137 (-) 291 WP_061943939.1 hypothetical protein -
  CPter91_RS27040 (CPter91_4667) - 4822201..4822359 (-) 159 WP_167595203.1 hypothetical protein -
  CPter91_RS21460 (CPter91_4669) - 4822789..4823421 (+) 633 WP_061943941.1 response regulator transcription factor -
  CPter91_RS21465 (CPter91_4670) - 4823470..4823832 (-) 363 WP_061943943.1 sensor histidine kinase -
  CPter91_RS21470 - 4824041..4824310 (-) 270 Protein_4339 transposase -
  CPter91_RS21475 (CPter91_4672) - 4825163..4826527 (+) 1365 WP_236905881.1 type III effector -
  CPter91_RS27045 - 4826685..4827219 (+) 535 Protein_4341 transposase -
  CPter91_RS27815 - 4827387..4827770 (+) 384 Protein_4342 transposase -
  CPter91_RS21490 (CPter91_4676) - 4828052..4830868 (-) 2817 WP_167595204.1 autotransporter serine protease -
  CPter91_RS21495 - 4831762..4832109 (-) 348 WP_150119776.1 hypothetical protein -
  CPter91_RS26715 (CPter91_4677) - 4833065..4833784 (-) 720 WP_167595205.1 ADP-ribosyltransferase domain-containing protein -
  CPter91_RS21510 (CPter91_4678) - 4834324..4834533 (-) 210 WP_061943961.1 hypothetical protein -
  CPter91_RS27450 - 4834632..4835206 (-) 575 Protein_4347 DDE-type integrase/transposase/recombinase -
  CPter91_RS21525 (CPter91_4680) - 4835281..4835691 (-) 411 WP_061943967.1 CesT family type III secretion system chaperone -
  CPter91_RS21530 (CPter91_4681) - 4835806..4838523 (-) 2718 WP_150119778.1 hypothetical protein -
  CPter91_RS27820 - 4838822..4838965 (-) 144 WP_082793136.1 papain-like cysteine protease family protein -
  CPter91_RS21535 (CPter91_4683) - 4839791..4840042 (-) 252 WP_061943972.1 hypothetical protein -
  CPter91_RS21540 (CPter91_4684) - 4840504..4844895 (+) 4392 WP_150119779.1 hypothetical protein -
  CPter91_RS26720 - 4845056..4845478 (+) 423 WP_150119780.1 hypothetical protein -
  CPter91_RS21545 (CPter91_4685) - 4845441..4845926 (+) 486 WP_150119781.1 hypothetical protein -
  CPter91_RS21550 (CPter91_4686) - 4846094..4846348 (+) 255 WP_061943981.1 hypothetical protein -
  CPter91_RS21555 (CPter91_4687) - 4846338..4846532 (+) 195 WP_061943984.1 hypothetical protein -
  CPter91_RS21560 (CPter91_4688) - 4846695..4847147 (+) 453 WP_061946506.1 lytic transglycosylase domain-containing protein -
  CPter91_RS21565 (CPter91_4689) - 4847174..4848253 (+) 1080 WP_061943986.1 SET domain-containing protein-lysine N-methyltransferase -
  CPter91_RS21570 (CPter91_4690) - 4848574..4849347 (-) 774 WP_061943988.1 response regulator transcription factor -
  CPter91_RS26305 - 4850177..4850284 (-) 108 Protein_4360 IS110 family transposase -
  CPter91_RS21575 (CPter91_4691) - 4850647..4851180 (-) 534 WP_205631625.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 39465.02 Da        Isoelectric Point: 5.3835

>NTDB_id=160906 CPter91_RS21440 WP_061943931.1 4817215..4818336(-) (recA) [Collimonas pratensis strain Ter91]
MDDKKSAVNPDKSKALAAALAQIEKQFGKGSVMRMDDGAVVEEVQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT
TLTLQTIAEMQKLGGTCAFIDAEHALDVGYAQKLGINLSELLISQPDTGEQALEITDALVRSGGVDLIVIDSVAALTPRA
EIEGDMGDSLPGLQARLMSQALRKLTGSINRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKS
GDEVIGNETKVKVVKNKIAPPFKEAHFDILYGEGTSREGEILDLGSDAKIVEKSGAWYSYNGERIGQGKDNARTYLKERP
ELAREIENKVRASLGVPLLGEIKAAEGGDKADKAAAKANKAAAAAAAKAEEPV

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=160906 CPter91_RS21440 WP_061943931.1 4817215..4818336(-) (recA) [Collimonas pratensis strain Ter91]
ATGGACGATAAAAAATCCGCCGTCAACCCGGATAAAAGCAAGGCCCTTGCCGCGGCCTTGGCGCAGATCGAAAAGCAGTT
CGGCAAAGGTTCGGTCATGCGGATGGACGACGGCGCCGTGGTCGAAGAAGTGCAAGTGGTCTCGACCGGCTCGCTCGGCC
TGGACATCGCGCTCGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGGTCGAAATCTACGGTCCGGAATCCTCCGGCAAGACC
ACACTGACCCTGCAAACCATCGCCGAAATGCAAAAGCTGGGCGGCACCTGCGCCTTCATCGATGCGGAACACGCGCTGGA
CGTCGGCTATGCCCAGAAACTGGGCATCAACCTGTCCGAACTGCTGATCTCGCAACCGGATACCGGCGAACAGGCGCTGG
AAATCACCGATGCGCTGGTGCGCTCCGGCGGCGTCGACCTGATCGTCATCGACTCGGTGGCGGCCTTGACGCCACGCGCC
GAAATCGAAGGCGATATGGGCGATTCCCTGCCTGGCCTGCAAGCGCGCCTGATGTCGCAAGCGCTGCGCAAGCTGACCGG
CAGCATCAACCGCACCAACACCCTGGTCATCTTCATCAACCAGATTCGCATGAAGATCGGCGTCATGTTCGGCAATCCGG
AAACCACCACCGGCGGCAATGCCCTCAAGTTCTACGCTTCGGTGCGCCTGGATATCCGCCGCACCGGCTCGATCAAGTCC
GGCGACGAAGTCATCGGCAACGAAACCAAGGTCAAGGTCGTCAAGAACAAGATCGCGCCGCCATTCAAGGAAGCGCACTT
CGACATCCTGTATGGCGAAGGCACATCGCGCGAAGGTGAAATCCTCGATCTCGGTTCCGATGCCAAGATCGTTGAAAAGT
CGGGCGCCTGGTACAGCTACAACGGCGAACGCATCGGCCAGGGCAAGGACAATGCACGCACCTACCTGAAAGAACGTCCG
GAACTGGCGCGCGAGATCGAAAACAAGGTACGCGCATCGCTGGGCGTGCCGCTGCTGGGCGAGATCAAGGCTGCCGAGGG
CGGCGACAAGGCTGACAAAGCCGCTGCCAAGGCCAATAAAGCTGCTGCAGCCGCGGCCGCCAAGGCTGAAGAGCCGGTCT
GA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A127QAD6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.609

93.298

0.761
  recA Neisseria gonorrhoeae MS11

73.476

87.936

0.646
  recA Neisseria gonorrhoeae MS11

73.476

87.936

0.646
  recA Neisseria gonorrhoeae strain FA1090

73.476

87.936

0.646
  recA Vibrio cholerae strain A1552

71.515

88.472

0.633
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.515

88.472

0.633
  recA Glaesserella parasuis strain SC1401

71.037

87.936

0.625
  recA Pseudomonas stutzeri DSM 10701

71.254

87.668

0.625
  recA Acinetobacter baylyi ADP1

70.948

87.668

0.622
  recA Acinetobacter baumannii D1279779

70.642

87.668

0.619
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.976

88.74

0.603
  recA Helicobacter pylori 26695

64.242

88.472

0.568
  recA Helicobacter pylori strain NCTC11637

63.939

88.472

0.566
  recA Bacillus subtilis subsp. subtilis str. 168

64.417

87.399

0.563
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

88.472

0.563
  recA Streptococcus pyogenes NZ131

63.526

88.204

0.56
  recA Streptococcus pneumoniae Rx1

63.03

88.472

0.558
  recA Streptococcus pneumoniae R6

63.03

88.472

0.558
  recA Streptococcus pneumoniae TIGR4

63.03

88.472

0.558
  recA Streptococcus pneumoniae D39

63.03

88.472

0.558
  recA Streptococcus mitis SK321

61.176

91.153

0.558
  recA Streptococcus mitis NCTC 12261

61.176

91.153

0.558
  recA Streptococcus mutans UA159

62.727

88.472

0.555
  recA Lactococcus lactis subsp. cremoris KW2

60.588

91.153

0.552
  recA Latilactobacillus sakei subsp. sakei 23K

62.883

87.399

0.55
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.462

87.131

0.544

Multiple sequence alignment