Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CAter10_RS18165 Genome accession   NZ_CP013233
Coordinates   3963165..3964283 (-) Length   372 a.a.
NCBI ID   WP_061534521.1    Uniprot ID   A0A127QNZ2
Organism   Collimonas arenae strain Ter10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3958165..3969283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAter10_RS18135 (CAter10_4225) - 3958303..3958935 (-) 633 WP_236905410.1 protein phosphatase 2C domain-containing protein -
  CAter10_RS18140 (CAter10_4226) sucD 3959215..3960096 (-) 882 WP_061534516.1 succinate--CoA ligase subunit alpha -
  CAter10_RS18145 (CAter10_4227) - 3960143..3960430 (-) 288 WP_061534517.1 GIY-YIG nuclease family protein -
  CAter10_RS18150 (CAter10_4228) sucC 3960496..3961668 (-) 1173 Protein_3684 ADP-forming succinate--CoA ligase subunit beta -
  CAter10_RS18155 (CAter10_4229) - 3961683..3962294 (-) 612 WP_061534519.1 DUF2889 domain-containing protein -
  CAter10_RS18160 (CAter10_4230) recX 3962470..3962931 (-) 462 WP_061534520.1 recombination regulator RecX -
  CAter10_RS18165 (CAter10_4231) recA 3963165..3964283 (-) 1119 WP_061534521.1 recombinase RecA Machinery gene
  CAter10_RS18170 (CAter10_4234) ggt 3964809..3966470 (+) 1662 WP_231879318.1 gamma-glutamyltransferase -
  CAter10_RS18175 (CAter10_4235) - 3966708..3967757 (+) 1050 WP_061534523.1 DUF1338 domain-containing protein -
  CAter10_RS18180 (CAter10_4236) - 3967759..3969177 (+) 1419 WP_061534524.1 FAD-binding oxidoreductase -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 39381.85 Da        Isoelectric Point: 5.3869

>NTDB_id=160886 CAter10_RS18165 WP_061534521.1 3963165..3964283(-) (recA) [Collimonas arenae strain Ter10]
MDDKKSAPNPDKSKALAAALAQIEKQFGKGSVMRMEDGAVVEEVQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT
TLTLQTIAEMQKLGGTCAFIDAEHALDVGYAQKLGINLSELLISQPDTGEQALEITDALVRSGGVDLIVVDSVAALTPRA
EIEGDMGDSLPGLQARLMSQALRKLTGSINRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKS
GDEVIGNETKVKVVKNKIAPPFKEAHFDILYGEGTSREGEILDLGSDAKIVEKSGAWYSYNGERIGQGKDNARTYLKERP
ELAREIENKVRASLGVPELGAIKSDGGDKAEKAAAKANKAAAAAAAKSEEPV

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=160886 CAter10_RS18165 WP_061534521.1 3963165..3964283(-) (recA) [Collimonas arenae strain Ter10]
ATGGACGATAAAAAATCCGCACCCAATCCGGATAAAAGCAAGGCCCTTGCCGCGGCCTTGGCGCAAATCGAGAAACAATT
CGGCAAAGGTTCGGTCATGCGCATGGAAGACGGCGCCGTGGTCGAAGAAGTGCAAGTGGTCTCGACCGGCTCGCTCGGCC
TGGATATCGCCCTGGGCGTCGGCGGCTTGCCGCGCGGCCGGGTAGTCGAAATCTACGGTCCTGAATCGTCCGGTAAAACC
ACGCTGACGCTGCAGACTATCGCCGAAATGCAAAAGCTCGGCGGCACCTGCGCGTTTATCGATGCGGAACACGCACTGGA
CGTCGGTTACGCACAGAAATTGGGCATCAACCTGTCCGAACTGCTGATTTCGCAACCGGATACCGGCGAACAAGCGCTGG
AAATCACCGATGCGCTGGTGCGCTCGGGCGGCGTTGACCTGATCGTGGTCGACTCGGTTGCAGCCTTGACGCCACGCGCT
GAAATCGAAGGCGACATGGGCGATTCCCTGCCAGGCCTGCAAGCGCGTCTGATGTCGCAAGCGCTGCGCAAGCTGACCGG
CAGCATCAACCGCACCAACACGCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCGGCAATCCGG
AAACCACCACCGGTGGTAACGCCCTGAAGTTCTACGCTTCGGTGCGCCTGGATATCCGCCGTACCGGCTCGATCAAATCC
GGCGACGAAGTCATCGGCAACGAAACCAAGGTCAAGGTCGTCAAGAACAAGATCGCGCCGCCATTCAAGGAAGCGCATTT
CGACATCCTGTATGGCGAAGGCACATCGCGCGAAGGTGAAATCCTCGATCTCGGTTCCGATGCCAAGATCGTTGAAAAGT
CGGGCGCCTGGTACAGCTACAACGGCGAACGCATCGGCCAGGGCAAGGACAACGCCCGTACCTACTTGAAAGAACGGCCA
GAACTGGCGCGTGAAATCGAGAACAAGGTGCGCGCTTCCCTGGGCGTGCCAGAACTCGGCGCGATCAAGTCGGACGGCGG
CGACAAGGCTGAAAAAGCCGCAGCCAAGGCCAACAAGGCCGCAGCTGCTGCAGCAGCAAAGTCGGAAGAGCCGGTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A127QNZ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.75

86.022

0.72
  recA Glaesserella parasuis strain SC1401

67.127

97.312

0.653
  recA Neisseria gonorrhoeae MS11

73.926

87.634

0.648
  recA Neisseria gonorrhoeae MS11

73.926

87.634

0.648
  recA Neisseria gonorrhoeae strain FA1090

73.926

87.634

0.648
  recA Vibrio cholerae strain A1552

72.561

88.172

0.64
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.561

88.172

0.64
  recA Acinetobacter baylyi ADP1

70.659

89.785

0.634
  recA Pseudomonas stutzeri DSM 10701

72.086

87.634

0.632
  recA Acinetobacter baumannii D1279779

71.166

87.634

0.624
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.964

89.785

0.61
  recA Helicobacter pylori 26695

64.264

89.516

0.575
  recA Streptococcus mutans UA159

60.34

94.892

0.573
  recA Helicobacter pylori strain NCTC11637

63.964

89.516

0.573
  recA Bacillus subtilis subsp. subtilis str. 168

63.855

89.247

0.57
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.134

88.441

0.567
  recA Streptococcus pyogenes NZ131

63.83

88.441

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.763

89.516

0.562
  recA Streptococcus pneumoniae Rx1

63.333

88.71

0.562
  recA Streptococcus pneumoniae D39

63.333

88.71

0.562
  recA Streptococcus pneumoniae R6

63.333

88.71

0.562
  recA Streptococcus pneumoniae TIGR4

63.333

88.71

0.562
  recA Streptococcus mitis NCTC 12261

63.03

88.71

0.559
  recA Streptococcus mitis SK321

63.03

88.71

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

62.614

88.441

0.554
  recA Lactococcus lactis subsp. cremoris KW2

60.294

91.398

0.551

Multiple sequence alignment