Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ASL14_RS01040 Genome accession   NZ_CP013203
Coordinates   231091..232152 (-) Length   353 a.a.
NCBI ID   WP_134910046.1    Uniprot ID   -
Organism   Paenibacillus sp. IHB B 3084     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 226091..237152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASL14_RS01020 (ASL14_01010) - 226962..227222 (-) 261 WP_127191716.1 stage V sporulation protein S -
  ASL14_RS01025 (ASL14_01015) - 227353..228147 (-) 795 WP_044644815.1 TIGR00282 family metallophosphoesterase -
  ASL14_RS01030 (ASL14_01020) rny 228224..229768 (-) 1545 WP_014281153.1 ribonuclease Y -
  ASL14_RS01035 (ASL14_01025) - 230146..230895 (-) 750 WP_134910044.1 RecX family transcriptional regulator -
  ASL14_RS01040 (ASL14_01030) recA 231091..232152 (-) 1062 WP_134910046.1 recombinase RecA Machinery gene
  ASL14_RS01045 (ASL14_01035) - 232401..233669 (-) 1269 WP_134910048.1 competence/damage-inducible protein A -
  ASL14_RS01050 (ASL14_01040) pgsA 233765..234352 (-) 588 WP_025685004.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ASL14_RS01055 (ASL14_01045) - 234562..235053 (-) 492 WP_014281148.1 YajQ family cyclic di-GMP-binding protein -
  ASL14_RS27200 - 235196..235360 (-) 165 WP_162833917.1 hypothetical protein -
  ASL14_RS01060 (ASL14_01050) - 235445..236563 (-) 1119 WP_134910051.1 RodZ domain-containing protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38175.38 Da        Isoelectric Point: 4.9792

>NTDB_id=160632 ASL14_RS01040 WP_134910046.1 231091..232152(-) (recA) [Paenibacillus sp. IHB B 3084]
MSDRRAALDMALRQIEKQFGKGSIMKLGESTHMQVETITSGSIALDIALGTGGFPRGRIIEVYGPESSGKTTVALHAIAE
VQKTGGQAAFIDAEHALDPSYASKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSNTIAIFINQLREKIGVMFGNPETTPGGRALKFYSTVRLDVRRIESLKNGNDVVGNRT
RIKVVKNKVAPPFRQAEVDIMYGEGISKTGSLIDIGTEYDIVDKSGAWYSYEGERLGQGRENAKQFLKENPNIASTIEQK
IRVASNLITTVAPPTEEELAQQAKEEQELLELE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=160632 ASL14_RS01040 WP_134910046.1 231091..232152(-) (recA) [Paenibacillus sp. IHB B 3084]
TTGTCAGATCGTCGTGCTGCGCTGGATATGGCGCTCCGTCAAATAGAAAAGCAATTCGGTAAAGGTTCCATTATGAAGTT
GGGTGAGTCCACCCATATGCAAGTGGAAACTATTACCAGTGGTTCGATTGCTTTGGATATTGCGTTAGGAACGGGCGGCT
TCCCGAGAGGCCGAATTATTGAGGTATATGGACCAGAATCATCCGGTAAAACAACGGTAGCTCTTCACGCTATAGCAGAG
GTACAAAAAACAGGCGGACAAGCCGCTTTTATCGACGCCGAGCATGCTCTTGATCCGTCGTATGCCAGCAAGCTGGGTGT
CAATATTGATGAGTTGTTGCTATCGCAGCCAGATACAGGAGAGCAAGCACTTGAGATTGCCGAAGCGCTTGTACGTAGTG
GAGCGGTAGACATTGTTGTTGTTGACTCTGTAGCGGCACTTGTGCCAAAAGCGGAGATTGAAGGTGAAATGGGAGATTCC
CATGTTGGTCTTCAAGCCCGTTTAATGTCACAGGCATTGCGTAAGCTGTCCGGTGCTATTAACAAGTCGAACACCATTGC
TATCTTTATTAACCAATTACGTGAAAAAATAGGTGTTATGTTCGGTAACCCTGAAACTACACCAGGTGGACGTGCTCTGA
AATTTTATTCTACAGTTCGTTTGGATGTCCGCCGCATTGAAAGCTTGAAAAACGGTAATGATGTTGTTGGTAACCGCACA
CGTATTAAAGTGGTGAAGAACAAAGTCGCACCTCCTTTCCGTCAGGCGGAAGTGGACATTATGTACGGCGAAGGCATCTC
CAAGACAGGCAGTTTGATCGACATTGGTACGGAGTATGACATTGTCGATAAGAGCGGAGCTTGGTATTCCTATGAAGGTG
AACGACTAGGTCAGGGACGTGAAAATGCGAAGCAATTTTTGAAGGAAAATCCGAACATTGCTAGCACGATCGAACAAAAA
ATTCGGGTGGCCAGCAATTTGATTACGACGGTAGCTCCGCCGACAGAAGAAGAGTTGGCACAGCAAGCCAAGGAAGAACA
GGAATTGCTGGAGCTTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.093

91.218

0.776
  recA Latilactobacillus sakei subsp. sakei 23K

71.681

96.034

0.688
  recA Streptococcus mitis NCTC 12261

66.762

98.867

0.66
  recA Streptococcus mutans UA159

66

99.15

0.654
  recA Streptococcus mitis SK321

66.763

98.017

0.654
  recA Streptococcus pneumoniae Rx1

68.58

93.768

0.643
  recA Streptococcus pneumoniae D39

68.58

93.768

0.643
  recA Streptococcus pneumoniae R6

68.58

93.768

0.643
  recA Streptococcus pneumoniae TIGR4

68.58

93.768

0.643
  recA Streptococcus pyogenes NZ131

68.923

92.068

0.635
  recA Lactococcus lactis subsp. cremoris KW2

66.767

93.768

0.626
  recA Neisseria gonorrhoeae MS11

65.269

94.618

0.618
  recA Neisseria gonorrhoeae MS11

65.269

94.618

0.618
  recA Neisseria gonorrhoeae strain FA1090

65.269

94.618

0.618
  recA Pseudomonas stutzeri DSM 10701

63.343

96.601

0.612
  recA Vibrio cholerae strain A1552

67.188

90.652

0.609
  recA Acinetobacter baylyi ADP1

61.08

99.717

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.188

90.652

0.609
  recA Glaesserella parasuis strain SC1401

60.857

99.15

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.732

90.935

0.598
  recA Acinetobacter baumannii D1279779

63.72

92.918

0.592
  recA Ralstonia pseudosolanacearum GMI1000

67.857

87.252

0.592
  recA Helicobacter pylori 26695

61.176

96.317

0.589
  recA Helicobacter pylori strain NCTC11637

60.882

96.317

0.586
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.883

92.351

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

91.501

0.555

Multiple sequence alignment