Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CMT41_RS14125 Genome accession   NZ_CP013145
Coordinates   3317292..3318359 (-) Length   355 a.a.
NCBI ID   WP_058027632.1    Uniprot ID   A0A0S2JJ12
Organism   Colwellia sp. MT41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3312292..3323359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMT41_RS14100 (CMT41_14100) nadB 3312895..3314502 (+) 1608 WP_057181932.1 L-aspartate oxidase -
  CMT41_RS14105 (CMT41_14105) - 3314515..3314805 (-) 291 WP_057181934.1 hypothetical protein -
  CMT41_RS14110 (CMT41_14110) - 3314948..3315253 (-) 306 WP_197410289.1 succinate dehydrogenase assembly factor 2 -
  CMT41_RS14115 (CMT41_14115) ygfZ 3315440..3316417 (+) 978 WP_057181936.1 tRNA-modifying protein YgfZ -
  CMT41_RS14120 (CMT41_14120) - 3316709..3317197 (+) 489 WP_057181938.1 peptidylprolyl isomerase -
  CMT41_RS14125 (CMT41_14125) recA 3317292..3318359 (-) 1068 WP_058027632.1 recombinase RecA Machinery gene
  CMT41_RS14130 (CMT41_14130) - 3319243..3321459 (-) 2217 WP_157466384.1 EAL domain-containing protein -
  CMT41_RS14135 (CMT41_14135) - 3321745..3322641 (-) 897 WP_057181944.1 ArgP/LysG family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38213.90 Da        Isoelectric Point: 5.0788

>NTDB_id=160309 CMT41_RS14125 WP_058027632.1 3317292..3318359(-) (recA) [Colwellia sp. MT41]
MKDDKEKALSAALSQIERQFGKGSIMKLGDNTTMDIETISTGSLGLDIALGAGGLPLGRVVEIYGPESSGKTTLTLEVIA
SAQREGRTCAFIDAEHALDPIYAKKLGVDIDQLLISQPDTGEQALEIVDMLARSGAIDVIVVDSVAALTPKAEIEGDMGD
SHMGLQARMMSQAMRKLTGNLKTSNTMLIFINQIRMKIGVMFGSPETTTGGNALKFYASIRLDIRRIGAVKNGDEIIGNE
TRVKVVKNKIAPPFKQAEFQIIYGKGINSLGELIELGVKHGFVEKAGAWYSCNGERIGQGKANAAKYLEEHPDMAKDVDT
KLRDMLLNKTAEEDKAVDKAVDKAEAVEKVADVAE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=160309 CMT41_RS14125 WP_058027632.1 3317292..3318359(-) (recA) [Colwellia sp. MT41]
ATGAAAGACGATAAAGAAAAAGCATTATCTGCTGCCTTAAGCCAAATCGAGAGACAATTCGGTAAAGGGTCAATTATGAA
GCTTGGTGATAATACCACTATGGACATAGAAACTATTTCTACCGGTTCTTTAGGTTTGGATATTGCCTTAGGCGCTGGTG
GTTTACCGTTAGGTCGGGTGGTTGAAATTTATGGTCCAGAGTCAAGTGGTAAAACTACGTTAACTCTTGAGGTTATTGCC
TCAGCCCAACGAGAGGGGCGAACCTGTGCTTTTATAGATGCTGAACATGCACTTGATCCTATCTATGCCAAAAAGTTAGG
GGTAGATATTGATCAATTACTTATTTCTCAGCCCGATACCGGTGAACAAGCTTTAGAGATTGTTGATATGCTAGCTCGCT
CTGGTGCTATTGATGTGATTGTCGTTGATTCTGTGGCCGCGTTAACACCTAAAGCTGAAATTGAAGGTGATATGGGTGAT
TCTCATATGGGACTTCAAGCTCGAATGATGAGTCAAGCGATGCGTAAATTAACCGGTAATCTTAAAACATCAAACACCAT
GTTAATTTTCATTAACCAAATTCGCATGAAAATCGGCGTAATGTTTGGCTCGCCAGAAACAACTACTGGTGGTAATGCGT
TAAAGTTTTATGCTTCTATTCGTTTAGATATTCGTCGTATCGGCGCGGTTAAAAATGGTGATGAAATCATTGGTAATGAA
ACACGCGTAAAAGTAGTTAAAAATAAAATAGCACCACCATTTAAACAAGCTGAATTTCAAATTATTTATGGTAAAGGCAT
CAATAGTTTAGGTGAATTAATTGAGTTGGGCGTTAAACATGGTTTTGTTGAAAAAGCCGGTGCTTGGTATAGCTGTAATG
GCGAACGTATTGGCCAAGGTAAAGCGAATGCCGCTAAATACTTAGAAGAACATCCTGATATGGCCAAGGATGTAGATACT
AAGTTACGTGATATGCTTTTAAACAAAACGGCAGAAGAAGATAAAGCAGTAGACAAAGCCGTAGACAAAGCAGAAGCAGT
AGAAAAAGTGGCTGATGTCGCTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0S2JJ12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

80.488

92.394

0.744
  recA Vibrio cholerae O1 biovar El Tor strain E7946

80.488

92.394

0.744
  recA Acinetobacter baylyi ADP1

70.977

98.028

0.696
  recA Pseudomonas stutzeri DSM 10701

71.387

97.465

0.696
  recA Acinetobacter baumannii D1279779

73.394

92.113

0.676
  recA Glaesserella parasuis strain SC1401

70.37

91.268

0.642
  recA Neisseria gonorrhoeae MS11

68.519

91.268

0.625
  recA Neisseria gonorrhoeae MS11

68.519

91.268

0.625
  recA Neisseria gonorrhoeae strain FA1090

68.519

91.268

0.625
  recA Ralstonia pseudosolanacearum GMI1000

69.775

87.606

0.611
  recA Helicobacter pylori strain NCTC11637

62.539

90.986

0.569
  recA Streptococcus mutans UA159

56.941

99.437

0.566
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.468

92.113

0.566
  recA Helicobacter pylori 26695

62.229

90.986

0.566
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

90.423

0.558
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.859

93.803

0.552
  recA Streptococcus pneumoniae R6

60.185

91.268

0.549
  recA Streptococcus pneumoniae Rx1

60.185

91.268

0.549
  recA Streptococcus pneumoniae D39

60.185

91.268

0.549
  recA Streptococcus pneumoniae TIGR4

60.185

91.268

0.549
  recA Latilactobacillus sakei subsp. sakei 23K

58.084

94.085

0.546
  recA Streptococcus pyogenes NZ131

59.692

91.549

0.546
  recA Streptococcus mitis NCTC 12261

59.568

91.268

0.544
  recA Streptococcus mitis SK321

59.568

91.268

0.544
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.076

89.014

0.544
  recA Lactococcus lactis subsp. cremoris KW2

58.642

91.268

0.535

Multiple sequence alignment