Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SE1039_RS05495 Genome accession   NZ_CP013114
Coordinates   1143639..1144685 (+) Length   348 a.a.
NCBI ID   WP_002507827.1    Uniprot ID   A0A9X4L1K2
Organism   Staphylococcus equorum strain KS1039     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1138639..1149685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE1039_RS05470 (SE1039_11000) ymfI 1139260..1139964 (+) 705 WP_056935574.1 elongation factor P 5-aminopentanone reductase -
  SE1039_RS05475 (SE1039_11010) - 1140128..1140958 (+) 831 WP_002507831.1 YmfK family protein -
  SE1039_RS05480 (SE1039_11020) - 1140992..1141384 (+) 393 WP_002507830.1 helix-turn-helix domain-containing protein -
  SE1039_RS05485 (SE1039_11030) pgsA 1141437..1142015 (+) 579 WP_002507829.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SE1039_RS05490 (SE1039_11040) - 1142323..1143465 (+) 1143 WP_056935575.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  SE1039_RS05495 (SE1039_11050) recA 1143639..1144685 (+) 1047 WP_002507827.1 recombinase RecA Machinery gene
  SE1039_RS05500 (SE1039_11060) rny 1145010..1146569 (+) 1560 WP_002507826.1 ribonuclease Y -
  SE1039_RS05505 (SE1039_11070) - 1146790..1147008 (-) 219 WP_056935576.1 hypothetical protein -
  SE1039_RS05510 (SE1039_11080) - 1147173..1147961 (+) 789 WP_002507824.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37775.91 Da        Isoelectric Point: 5.2212

>NTDB_id=160003 SE1039_RS05495 WP_002507827.1 1143639..1144685(+) (recA) [Staphylococcus equorum strain KS1039]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNKAQRVSSVSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKTGGIAAFIDAEHALDPVYAEALGVDIQNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSKTTAVFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDMMYGKGISKEGELIDLGVENEIVDKSGAWYSYNGDRMGQGKENVKLYLKENPEIKEDINR
RLREALGIIDGDVKEDESEKQTTLLEDE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=160003 SE1039_RS05495 WP_002507827.1 1143639..1144685(+) (recA) [Staphylococcus equorum strain KS1039]
TTGGATAACGATCGTCAAAAAGCTTTAGATACAGTAATTAAAAATATGGAAAAATCATTTGGTAAAGGCGCAGTTATGAA
ATTAGGCGATAATAAAGCCCAAAGAGTGTCTAGCGTTTCAAGTGGTTCAGTTACTTTGGATAATGCTTTAGGTGTAGGTG
GCTACCCTAAAGGAAGAATTATAGAAATATATGGACCAGAAAGTTCTGGTAAAACTACAGTAGCATTACATGCTATTGCA
GAAGTACAAAAAACTGGTGGGATTGCGGCGTTTATTGATGCTGAACATGCGTTAGATCCTGTCTATGCAGAAGCTTTAGG
TGTAGATATTCAAAATCTATATTTATCTCAACCTGACCATGGGGAACAAGGATTGGAAATTGCCGAAGCATTCGTTAGAA
GTGGTGCTGTTGACATCGTAGTTGTTGACTCCGTTGCTGCGTTAACTCCAAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCGCGTTTAATGTCACAAGCATTGCGTAAACTTTCAGGCGCTATTTCTAAATCAAAAACAAC
AGCAGTATTTATTAACCAAATTCGCGAAAAAGTAGGCGTGATGTTCGGTAATCCTGAAGTAACACCGGGTGGACGTGCAT
TGAAATTCTATAGTTCTGTACGTTTAGAAGTACGTCGTGCTGAACAATTAAAACAAGGCCAAGATATTGTTGGTAATAGA
ACGAAAATTAAAGTTGTTAAAAATAAAGTAGCACCGCCATTCAGAGTTGCAGAAGTGGATATGATGTATGGTAAAGGTAT
CTCTAAAGAAGGAGAACTTATTGACTTAGGTGTTGAAAATGAAATTGTAGATAAATCAGGTGCTTGGTATTCATACAATG
GAGATCGTATGGGACAAGGTAAAGAAAATGTTAAATTATATCTGAAAGAAAACCCTGAAATCAAAGAAGATATTAATCGT
AGATTGCGTGAAGCTCTAGGCATTATCGATGGTGATGTTAAAGAAGACGAAAGTGAAAAACAAACTACGCTTCTTGAAGA
TGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.687

93.678

0.718
  recA Latilactobacillus sakei subsp. sakei 23K

67.714

100

0.681
  recA Streptococcus pneumoniae R6

64.47

100

0.647
  recA Streptococcus pneumoniae Rx1

64.47

100

0.647
  recA Streptococcus pneumoniae D39

64.47

100

0.647
  recA Streptococcus pneumoniae TIGR4

64.47

100

0.647
  recA Streptococcus mutans UA159

65.217

99.138

0.647
  recA Streptococcus mitis NCTC 12261

65.766

95.69

0.629
  recA Acinetobacter baylyi ADP1

62.931

100

0.629
  recA Streptococcus pyogenes NZ131

66.565

94.54

0.629
  recA Acinetobacter baumannii D1279779

62.644

100

0.626
  recA Streptococcus mitis SK321

65.465

95.69

0.626
  recA Lactococcus lactis subsp. cremoris KW2

64.955

95.115

0.618
  recA Neisseria gonorrhoeae MS11

64.134

94.54

0.606
  recA Neisseria gonorrhoeae MS11

64.134

94.54

0.606
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.134

94.54

0.606
  recA Neisseria gonorrhoeae strain FA1090

64.134

94.54

0.606
  recA Vibrio cholerae strain A1552

63.497

93.678

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.497

93.678

0.595
  recA Helicobacter pylori 26695

62.805

94.253

0.592
  recA Helicobacter pylori strain NCTC11637

62.5

94.253

0.589
  recA Ralstonia pseudosolanacearum GMI1000

63.898

89.943

0.575
  recA Pseudomonas stutzeri DSM 10701

59.88

95.977

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.121

95.115

0.572
  recA Glaesserella parasuis strain SC1401

60.87

92.529

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.877

93.103

0.557

Multiple sequence alignment