Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SIDU_RS13555 Genome accession   NZ_CP013070
Coordinates   2790030..2791103 (-) Length   357 a.a.
NCBI ID   WP_007683061.1    Uniprot ID   A0A4Q4J8L0
Organism   Sphingobium indicum B90A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2785030..2796103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIDU_RS13530 (SIDU_13280) - 2785131..2785634 (-) 504 WP_007683071.1 DUF3617 domain-containing protein -
  SIDU_RS13535 (SIDU_13285) - 2785748..2786284 (-) 537 WP_007683069.1 DUF3617 domain-containing protein -
  SIDU_RS13540 - 2786398..2786832 (+) 435 WP_007683067.1 DNA/RNA non-specific endonuclease -
  SIDU_RS13545 (SIDU_13290) - 2786819..2787247 (+) 429 WP_007683065.1 hypothetical protein -
  SIDU_RS13550 (SIDU_13295) uvrB 2787339..2789522 (+) 2184 WP_007683063.1 excinuclease ABC subunit UvrB -
  SIDU_RS13555 (SIDU_13300) recA 2790030..2791103 (-) 1074 WP_007683061.1 recombinase RecA Machinery gene
  SIDU_RS13560 (SIDU_13305) - 2791203..2791562 (-) 360 WP_007683060.1 response regulator -
  SIDU_RS13565 (SIDU_13310) - 2791653..2794079 (-) 2427 WP_020819872.1 response regulator -
  SIDU_RS13570 (SIDU_13315) - 2794108..2794701 (-) 594 WP_007683056.1 DUF2062 domain-containing protein -
  SIDU_RS13575 (SIDU_13320) smpB 2794701..2795183 (-) 483 WP_007683053.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38313.94 Da        Isoelectric Point: 5.3701

>NTDB_id=159562 SIDU_RS13555 WP_007683061.1 2790030..2791103(-) (recA) [Sphingobium indicum B90A]
MTAMLSLIDSKKTGTMDRQKALEAALSQIDRAFGKGSAMKLGSREKIEIEAISTGSLGLDIALGIGGLPRGRIVEIYGPE
SSGKTTLALHAIAEAQKAGGIAAFVDAEHALDPGYAKKLGVDIDELIVSQPDTGEQALEIVDTLVRSNAIDVLVVDSVAA
LVPRAEIEGEMGDSHVGLQARLMSQALRKLTGSISRSRCLVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRT
GQIKDREDIVGNATRVKVVKNKVAPPFKQVEFDIMYGEGVSKIGELLDIGVKAGLVEKSGAWFSYDSVRIGQGRENAKTY
LKEHPEMAERLEKAIRGKTEEVAEGMMAGPEAEDDGE

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=159562 SIDU_RS13555 WP_007683061.1 2790030..2791103(-) (recA) [Sphingobium indicum B90A]
ATGACCGCAATGCTCTCACTCATCGATTCCAAGAAGACGGGGACAATGGACAGACAGAAAGCATTGGAAGCGGCCCTTTC
CCAGATCGACCGCGCCTTCGGCAAGGGTTCGGCGATGAAGCTGGGCAGCCGCGAGAAGATCGAGATCGAGGCGATTTCGA
CGGGATCGCTGGGGTTGGACATCGCGCTCGGCATTGGCGGCCTGCCGCGCGGACGCATTGTGGAGATTTACGGGCCGGAA
AGCTCGGGCAAGACCACGCTGGCGCTGCACGCCATTGCCGAAGCGCAGAAGGCTGGCGGCATCGCGGCCTTCGTCGACGC
GGAACATGCGCTCGATCCCGGCTATGCGAAGAAGCTGGGCGTCGACATCGACGAACTGATCGTGTCGCAGCCGGACACGG
GCGAACAGGCGCTGGAGATCGTGGACACGCTGGTGCGGTCGAACGCCATCGACGTGCTGGTGGTCGACTCGGTCGCCGCG
CTGGTTCCCCGCGCGGAAATCGAGGGCGAGATGGGCGACAGCCATGTCGGCCTGCAGGCGCGCCTGATGAGCCAGGCGCT
GCGCAAGCTGACCGGTTCCATTTCCCGCTCGCGCTGCCTGGTGATCTTCATCAACCAGGTCCGCATGAAGATCGGCGTCA
TGTACGGCAACCCGGAAACGACGACCGGCGGCAATGCGCTCAAATTCTACGCCTCGGTGCGTTTGGACATTCGCCGCACG
GGCCAGATCAAGGACCGCGAGGACATTGTCGGCAACGCGACCCGGGTGAAGGTGGTCAAGAACAAGGTCGCGCCGCCCTT
CAAGCAGGTCGAATTCGACATCATGTATGGCGAGGGCGTGTCCAAGATCGGCGAACTGCTCGACATCGGCGTGAAGGCCG
GGCTGGTCGAGAAGTCGGGCGCCTGGTTCTCCTATGACTCGGTCCGCATCGGCCAGGGTCGGGAGAATGCGAAAACCTAT
CTGAAAGAACATCCCGAAATGGCGGAACGGCTGGAAAAGGCGATCCGCGGCAAGACCGAGGAGGTCGCCGAAGGGATGAT
GGCCGGACCCGAAGCGGAGGATGATGGCGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(20-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q4J8L0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

67.836

95.798

0.65
  recA Neisseria gonorrhoeae strain FA1090

67.836

95.798

0.65
  recA Neisseria gonorrhoeae MS11

67.836

95.798

0.65
  recA Pseudomonas stutzeri DSM 10701

68.343

94.678

0.647
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.312

89.636

0.63
  recA Vibrio cholerae strain A1552

70.312

89.636

0.63
  recA Glaesserella parasuis strain SC1401

70.312

89.636

0.63
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.205

95.798

0.625
  recA Acinetobacter baylyi ADP1

68.438

89.636

0.613
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.364

92.437

0.613
  recA Ralstonia pseudosolanacearum GMI1000

66.061

92.437

0.611
  recA Acinetobacter baumannii D1279779

68.125

89.636

0.611
  recA Streptococcus pneumoniae D39

62.791

96.359

0.605
  recA Streptococcus pneumoniae TIGR4

62.791

96.359

0.605
  recA Streptococcus pneumoniae R6

62.791

96.359

0.605
  recA Streptococcus pneumoniae Rx1

62.791

96.359

0.605
  recA Streptococcus mitis SK321

61.671

97.199

0.599
  recA Streptococcus mitis NCTC 12261

61.919

96.359

0.597
  recA Helicobacter pylori strain NCTC11637

64.545

92.437

0.597
  recA Bacillus subtilis subsp. subtilis str. 168

66.562

89.636

0.597
  recA Helicobacter pylori 26695

64.242

92.437

0.594
  recA Streptococcus pyogenes NZ131

62.162

93.277

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.349

92.997

0.58
  recA Latilactobacillus sakei subsp. sakei 23K

63.75

89.636

0.571
  recA Lactococcus lactis subsp. cremoris KW2

60.725

92.717

0.563
  recA Streptococcus mutans UA159

60.423

92.717

0.56

Multiple sequence alignment