Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   APZ00_RS15160 Genome accession   NZ_CP013068
Coordinates   3310534..3311604 (+) Length   356 a.a.
NCBI ID   WP_058899438.1    Uniprot ID   A0A0U3PKX5
Organism   Pannonibacter phragmitetus strain 31801     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3305534..3316604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APZ00_RS15140 (APZ00_15140) - 3305837..3306775 (-) 939 WP_058899435.1 DUF6384 family protein -
  APZ00_RS15145 (APZ00_15145) - 3306852..3308024 (-) 1173 WP_058899436.1 hypothetical protein -
  APZ00_RS15150 (APZ00_15150) - 3308199..3309137 (-) 939 WP_058899437.1 pseudouridine-5'-phosphate glycosidase -
  APZ00_RS15155 (APZ00_15155) - 3309276..3310214 (-) 939 WP_082676159.1 PfkB family carbohydrate kinase -
  APZ00_RS15160 (APZ00_15160) recA 3310534..3311604 (+) 1071 WP_058899438.1 recombinase RecA Machinery gene
  APZ00_RS15165 (APZ00_15165) alaS 3311891..3314548 (+) 2658 WP_058899439.1 alanine--tRNA ligase -
  APZ00_RS15170 (APZ00_15170) - 3314871..3316040 (+) 1170 WP_157757154.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37996.36 Da        Isoelectric Point: 4.9260

>NTDB_id=159553 APZ00_RS15160 WP_058899438.1 3310534..3311604(+) (recA) [Pannonibacter phragmitetus strain 31801]
MSQSSLRLVESSQMDKTKALDAALSQIERAFGKGSIMRMGQGQVVEVQTVSTGSLGLDIALGIGGLPKGRIVEIYGPESS
GKTTLALHTIAEAQKSGGICAFVDAEHALDPIYARKLGVNLDDLLISQPDAGEQALEIADTLVRSGAIDILVVDSVAALT
PKAELEGEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGS
IKDREEVVGNQTRVKVVKNKLAPPFRQVEFDIIYGEGVSKSGELVDLGVKANIVEKSGAWFSYNSQRLGQGRENAKQFLR
DNPAIADEIELAIRQNAGLLAEAITTGGSDSEDADD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=159553 APZ00_RS15160 WP_058899438.1 3310534..3311604(+) (recA) [Pannonibacter phragmitetus strain 31801]
ATGTCTCAGAGTTCACTTCGCCTTGTAGAGAGCAGCCAGATGGACAAGACCAAAGCGCTGGATGCAGCGCTCTCGCAGAT
CGAACGGGCCTTCGGTAAGGGCTCCATCATGCGCATGGGCCAGGGGCAGGTGGTTGAGGTCCAGACGGTCTCCACCGGCT
CCCTCGGCCTCGATATTGCGCTGGGCATCGGCGGATTGCCGAAGGGCCGTATCGTCGAGATTTACGGCCCGGAATCCTCG
GGCAAGACGACGCTGGCCCTGCACACCATTGCCGAGGCTCAGAAGTCCGGCGGCATCTGCGCCTTCGTGGATGCTGAGCA
CGCGCTCGATCCGATCTATGCCCGCAAGCTGGGCGTCAATCTGGACGACCTGCTGATCTCCCAGCCCGATGCCGGTGAAC
AGGCGCTTGAAATTGCCGATACGCTGGTGCGCTCCGGCGCCATCGACATTCTGGTGGTGGACTCGGTGGCCGCCCTAACG
CCGAAGGCCGAGCTGGAAGGCGAAATGGGCGACAGTCTGCCGGGCATGCAGGCCCGCCTGATGAGCCAGGCGTTGCGCAA
GCTCACGGCCTCCATCTCCAAGTCGAACTGCATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCG
GCTCGCCCGAAACCACGACGGGCGGTAACGCGCTGAAGTTCTATGCCTCCGTCCGCCTCGACATCCGCCGCATCGGCTCC
ATCAAGGACAGGGAAGAGGTTGTCGGCAACCAGACGCGCGTCAAGGTGGTGAAGAACAAGCTGGCGCCTCCGTTCCGCCA
GGTCGAATTCGACATCATCTACGGCGAAGGCGTATCCAAGTCGGGTGAGCTGGTCGATCTGGGCGTCAAGGCGAATATCG
TCGAGAAGTCCGGTGCCTGGTTCTCCTACAACAGCCAGCGCCTCGGTCAGGGTCGCGAGAACGCCAAGCAGTTCCTGCGC
GACAATCCGGCCATTGCCGATGAGATCGAACTGGCCATCCGCCAGAACGCCGGTCTTCTGGCTGAAGCCATCACCACCGG
TGGCAGCGATAGCGAAGACGCTGACGATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U3PKX5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

69.298

96.067

0.666
  recA Neisseria gonorrhoeae MS11

68.713

96.067

0.66
  recA Neisseria gonorrhoeae MS11

68.713

96.067

0.66
  recA Neisseria gonorrhoeae strain FA1090

68.713

96.067

0.66
  recA Pseudomonas stutzeri DSM 10701

67.826

96.91

0.657
  recA Acinetobacter baumannii D1279779

68.129

96.067

0.654
  recA Glaesserella parasuis strain SC1401

65.449

100

0.654
  recA Ralstonia pseudosolanacearum GMI1000

73.802

87.921

0.649
  recA Vibrio cholerae strain A1552

67.665

93.82

0.635
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.665

93.82

0.635
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.077

95.225

0.629
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.861

92.978

0.612
  recA Bacillus subtilis subsp. subtilis str. 168

66.154

91.292

0.604
  recA Helicobacter pylori 26695

66.154

91.292

0.604
  recA Helicobacter pylori strain NCTC11637

65.846

91.292

0.601
  recA Latilactobacillus sakei subsp. sakei 23K

63.385

91.292

0.579
  recA Streptococcus mitis NCTC 12261

59.366

97.472

0.579
  recA Streptococcus pneumoniae D39

59.078

97.472

0.576
  recA Streptococcus pneumoniae Rx1

59.078

97.472

0.576
  recA Streptococcus pneumoniae R6

59.078

97.472

0.576
  recA Streptococcus pneumoniae TIGR4

59.078

97.472

0.576
  recA Streptococcus mitis SK321

58.79

97.472

0.573
  recA Streptococcus mutans UA159

60.843

93.258

0.567
  recA Streptococcus pyogenes NZ131

60.671

92.135

0.559
  recA Lactococcus lactis subsp. cremoris KW2

59.639

93.258

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.342

88.764

0.553

Multiple sequence alignment