Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AQ980_RS28975 Genome accession   NZ_CP013055
Coordinates   5656460..5657536 (-) Length   358 a.a.
NCBI ID   WP_000741567.1    Uniprot ID   A0A9W5QLX7
Organism   Bacillus thuringiensis strain YWC2-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 5655406..5674342 5656460..5657536 within 0


Gene organization within MGE regions


Location: 5655406..5674342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AQ980_RS28970 (AQ980_29520) - 5655406..5656296 (+) 891 WP_002134197.1 hypothetical protein -
  AQ980_RS28975 (AQ980_29525) recA 5656460..5657536 (-) 1077 WP_000741567.1 recombinase RecA Machinery gene
  AQ980_RS28980 (AQ980_29530) - 5657878..5658069 (+) 192 WP_002134199.1 hypothetical protein -
  AQ980_RS28985 (AQ980_29535) - 5658085..5658351 (+) 267 WP_000956437.1 hypothetical protein -
  AQ980_RS28990 (AQ980_29540) - 5659355..5660575 (-) 1221 WP_033676384.1 IS110 family transposase -
  AQ980_RS28995 (AQ980_29545) - 5661057..5661995 (-) 939 WP_000403436.1 N-acetylmuramoyl-L-alanine amidase -
  AQ980_RS29000 (AQ980_29550) - 5661995..5662420 (-) 426 WP_000373855.1 phage holin family protein -
  AQ980_RS29005 (AQ980_29555) - 5662496..5662720 (-) 225 WP_000390477.1 hypothetical protein -
  AQ980_RS29010 (AQ980_29560) - 5662847..5663212 (-) 366 WP_015382147.1 hypothetical protein -
  AQ980_RS29015 (AQ980_29565) - 5663229..5668793 (-) 5565 WP_015382146.1 phage tail spike protein -
  AQ980_RS29020 (AQ980_29570) - 5668790..5670259 (-) 1470 WP_000093847.1 distal tail protein Dit -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38865.09 Da        Isoelectric Point: 4.8929

>NTDB_id=159524 AQ980_RS28975 WP_000741567.1 5656460..5657536(-) (recA) [Bacillus thuringiensis strain YWC2-8]
MAATENTTKGKEKALEEALKKIEKDFGKGAVMKLGERPEQKISVVSSGSVGLDNALGVGGYPKGRITEIFGPESSGKTTL
ALHAIAEVQKQGGTAAFIDAEHALDPVYAEKLGVNIDELFVSQPNTGEEALEIAEALVRSSAVEIIVVDSVAALVPQAEI
DGDMGASHVGLQARLMGQALRKISGAVSKNGVIAIFLNQLREKVGVSFGNPETTPGGRALKFYSTVRLEVRRSEQLKQGS
DIVGNKTKVKVVKNKVAPPFRNLEFDIMYGEGISLEGELVDIGVGLDIVQKSGSWYSYKEERLGQGRDNAKQFLKENENI
RNSVRNEIYEYYSPKEESIIVEEELIKENEPITLKESE

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=159524 AQ980_RS28975 WP_000741567.1 5656460..5657536(-) (recA) [Bacillus thuringiensis strain YWC2-8]
ATGGCAGCAACTGAAAATACAACTAAAGGAAAAGAGAAAGCATTAGAAGAGGCTCTGAAGAAAATTGAAAAAGATTTTGG
CAAAGGTGCTGTTATGAAACTGGGTGAGCGACCTGAACAAAAAATATCTGTTGTGTCAAGTGGCTCTGTTGGATTAGATA
ATGCTTTAGGTGTTGGTGGATATCCGAAAGGGCGCATTACTGAAATCTTTGGTCCCGAATCTTCAGGAAAGACAACACTA
GCATTACATGCAATTGCAGAAGTTCAAAAACAAGGTGGAACTGCGGCATTTATTGATGCGGAACATGCGCTTGATCCTGT
ATATGCAGAAAAGTTAGGTGTAAATATTGATGAGTTGTTTGTGTCACAACCGAATACGGGAGAAGAGGCGTTAGAGATAG
CGGAAGCGTTAGTAAGAAGTAGCGCTGTTGAAATTATTGTAGTAGACTCTGTAGCAGCTCTAGTACCACAGGCAGAAATT
GATGGTGATATGGGAGCATCACATGTTGGACTGCAAGCAAGGCTGATGGGGCAAGCCTTGAGGAAGATATCAGGAGCAGT
ATCTAAAAATGGAGTAATAGCTATATTTTTGAATCAACTTAGAGAGAAAGTGGGCGTTTCATTTGGGAATCCCGAGACGA
CACCTGGTGGTAGAGCGTTGAAGTTTTATTCAACTGTCCGTCTCGAAGTACGTCGTTCGGAGCAGTTAAAGCAAGGCAGT
GACATTGTTGGTAATAAAACAAAAGTGAAAGTAGTAAAAAATAAAGTTGCTCCACCATTTCGAAATTTAGAATTTGATAT
TATGTATGGAGAAGGCATTTCCCTAGAGGGAGAGCTTGTTGATATTGGGGTAGGGTTAGATATTGTTCAGAAAAGCGGAT
CATGGTATTCGTATAAAGAGGAGCGTCTTGGGCAAGGTAGAGATAATGCTAAGCAATTCCTGAAAGAAAATGAAAATATA
CGTAATTCTGTTCGAAATGAAATTTATGAATACTATTCTCCAAAAGAAGAATCTATTATTGTGGAAGAGGAGCTTATAAA
AGAAAATGAGCCCATCACTTTAAAAGAATCTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(13-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.087

89.944

0.684
  recA Streptococcus mutans UA159

62.817

99.162

0.623
  recA Latilactobacillus sakei subsp. sakei 23K

65.588

94.972

0.623
  recA Streptococcus mitis NCTC 12261

65.839

89.944

0.592
  recA Streptococcus pneumoniae D39

64.724

91.061

0.589
  recA Streptococcus pneumoniae Rx1

64.724

91.061

0.589
  recA Streptococcus pneumoniae R6

64.724

91.061

0.589
  recA Streptococcus pneumoniae TIGR4

64.724

91.061

0.589
  recA Streptococcus mitis SK321

65.528

89.944

0.589
  recA Streptococcus pyogenes NZ131

65.217

89.944

0.587
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.224

95.81

0.587
  recA Acinetobacter baumannii D1279779

58.79

96.927

0.57
  recA Neisseria gonorrhoeae MS11

63.323

89.106

0.564
  recA Neisseria gonorrhoeae MS11

63.323

89.106

0.564
  recA Neisseria gonorrhoeae strain FA1090

63.323

89.106

0.564
  recA Lactococcus lactis subsp. cremoris KW2

60.542

92.737

0.561
  recA Helicobacter pylori 26695

58.944

95.251

0.561
  recA Helicobacter pylori strain NCTC11637

58.944

95.251

0.561
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.009

89.106

0.561
  recA Acinetobacter baylyi ADP1

61.25

89.385

0.547
  recA Glaesserella parasuis strain SC1401

59.091

92.179

0.545
  recA Pseudomonas stutzeri DSM 10701

61.006

88.827

0.542
  recA Vibrio cholerae O1 biovar El Tor strain E7946

57.958

93.017

0.539
  recA Vibrio cholerae strain A1552

57.958

93.017

0.539
  recA Ralstonia pseudosolanacearum GMI1000

61.613

86.592

0.534
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.567

89.665

0.525

Multiple sequence alignment