Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   APX01_RS10285 Genome accession   NZ_CP012960
Coordinates   2184352..2185425 (-) Length   357 a.a.
NCBI ID   WP_002720615.1    Uniprot ID   A0AAX1UGY6
Organism   Cereibacter sphaeroides strain MBTLJ-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2179352..2190425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APX01_RS10270 (APX01_10265) - 2180372..2181166 (-) 795 WP_011338233.1 class II glutamine amidotransferase -
  APX01_RS10275 (APX01_10270) - 2181322..2181612 (-) 291 WP_002720613.1 DUF1330 domain-containing protein -
  APX01_RS10280 (APX01_10275) alaS 2181614..2184265 (-) 2652 WP_011338234.1 alanine--tRNA ligase -
  APX01_RS10285 (APX01_10280) recA 2184352..2185425 (-) 1074 WP_002720615.1 recombinase RecA Machinery gene
  APX01_RS10290 (APX01_10285) - 2185620..2186210 (+) 591 WP_009566057.1 hypothetical protein -
  APX01_RS10295 (APX01_10290) - 2186214..2188520 (-) 2307 WP_023003693.1 ATP-binding protein -
  APX01_RS10300 (APX01_10295) - 2188614..2189777 (-) 1164 WP_011338236.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38253.72 Da        Isoelectric Point: 5.1798

>NTDB_id=158624 APX01_RS10285 WP_002720615.1 2184352..2185425(-) (recA) [Cereibacter sphaeroides strain MBTLJ-8]
MATANLLDLNGRREMDKAKALESALAQIERQFGKGSIMKLGANSPVMEIEATSTGSLGLDIALGIGGLPKGRIIEIYGPE
SSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLISQPDTGEQALEIVDTLVRSGAVNLIVVDSVAA
LTPKSEIEGDMGDMQMGSQARLMSQAMRKLTASIGRSNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRT
GAIKDRDNVIGNTTKVKVVKNKVAPPFREVEFDIMYGEGISKTGELVDLGVKAGVVEKSGSWYSYGDERIGQGRENAKAF
LRANPTVAGDIEDRIRASHGLDFSTGEDGKGDDLVDM

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=158624 APX01_RS10285 WP_002720615.1 2184352..2185425(-) (recA) [Cereibacter sphaeroides strain MBTLJ-8]
ATGGCGACGGCGAACCTGCTCGACTTGAACGGAAGGCGCGAGATGGACAAGGCGAAGGCGCTCGAAAGCGCGCTGGCACA
GATCGAACGGCAGTTCGGCAAGGGCTCGATCATGAAACTGGGGGCCAACAGCCCGGTCATGGAGATCGAGGCGACTTCGA
CGGGCTCGCTGGGTCTCGATATCGCGCTCGGCATCGGCGGTCTGCCCAAGGGGCGAATCATCGAGATCTACGGCCCCGAA
AGCTCGGGCAAGACCACGCTGACCCTGCATGTGGTGGCGGAAGAGCAGAAGAAGGGTGGCGTCTGCGCCTTCGTGGACGC
CGAACATGCTCTCGACCCGCAATATGCCAAGAAGCTCGGCGTCAACCTGGACGAACTCCTCATCAGCCAGCCCGACACGG
GCGAGCAGGCGCTCGAGATCGTCGACACGCTGGTCCGGTCCGGCGCGGTGAACCTGATCGTGGTCGACTCGGTGGCGGCG
CTGACGCCCAAGTCCGAGATCGAGGGCGACATGGGCGACATGCAGATGGGCTCGCAGGCCCGCCTGATGAGCCAGGCCAT
GCGGAAGCTGACCGCATCCATCGGCCGGTCGAACTGCATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGA
TGTTCGGCAACCCCGAGACGACGACGGGCGGCAACGCGCTGAAGTTTTACGCCTCCGTGCGCCTCGACATTCGCCGGACC
GGTGCCATCAAGGACCGCGACAATGTCATCGGCAACACGACGAAGGTGAAGGTGGTCAAGAACAAGGTGGCCCCGCCCTT
CCGCGAGGTCGAGTTCGACATCATGTATGGCGAGGGCATTTCGAAGACGGGCGAGCTCGTCGATCTCGGCGTCAAGGCCG
GCGTGGTCGAGAAGTCGGGCTCCTGGTATTCCTACGGCGACGAGCGGATCGGGCAGGGGCGCGAGAATGCCAAGGCCTTC
CTGCGCGCGAACCCCACGGTTGCCGGCGATATCGAAGATCGGATTCGCGCCTCGCATGGGCTGGACTTCTCGACCGGGGA
AGACGGCAAGGGCGACGATCTGGTGGACATGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

72.5

89.636

0.65
  recA Ralstonia pseudosolanacearum GMI1000

72.611

87.955

0.639
  recA Acinetobacter baumannii D1279779

67.665

93.557

0.633
  recA Vibrio cholerae strain A1552

70.093

89.916

0.63
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.093

89.916

0.63
  recA Acinetobacter baylyi ADP1

70.093

89.916

0.63
  recA Pseudomonas stutzeri DSM 10701

69.565

90.196

0.627
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.396

95.518

0.625
  recA Neisseria gonorrhoeae MS11

66.867

92.997

0.622
  recA Neisseria gonorrhoeae MS11

66.867

92.997

0.622
  recA Neisseria gonorrhoeae strain FA1090

66.867

92.997

0.622
  recA Bacillus subtilis subsp. subtilis str. 168

66.667

91.597

0.611
  recA Helicobacter pylori strain NCTC11637

66.258

91.317

0.605
  recA Helicobacter pylori 26695

65.644

91.317

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.031

91.317

0.594
  recA Streptococcus mitis SK321

62.424

92.437

0.577
  recA Streptococcus mitis NCTC 12261

62.121

92.437

0.574
  recA Streptococcus pneumoniae Rx1

61.515

92.437

0.569
  recA Streptococcus pneumoniae R6

61.515

92.437

0.569
  recA Streptococcus pneumoniae TIGR4

61.515

92.437

0.569
  recA Streptococcus pneumoniae D39

61.515

92.437

0.569
  recA Lactococcus lactis subsp. cremoris KW2

58.333

97.479

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

59.587

94.958

0.566
  recA Streptococcus mutans UA159

61.212

92.437

0.566
  recA Streptococcus pyogenes NZ131

60.79

92.157

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.728

90.756

0.56

Multiple sequence alignment