Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AO703_RS16550 Genome accession   NZ_CP012871
Coordinates   3570708..3571766 (-) Length   352 a.a.
NCBI ID   WP_013365052.1    Uniprot ID   A0A806X6Z4
Organism   [Enterobacter] lignolyticus strain G5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3565708..3576766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AO703_RS16535 (AO703_16490) csrA 3566886..3567071 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  AO703_RS16540 (AO703_16495) alaS 3567312..3569939 (-) 2628 WP_013365054.1 alanine--tRNA ligase -
  AO703_RS16545 (AO703_16500) recX 3570128..3570631 (-) 504 WP_062741762.1 recombination regulator RecX -
  AO703_RS16550 (AO703_16505) recA 3570708..3571766 (-) 1059 WP_013365052.1 recombinase RecA Machinery gene
  AO703_RS16555 (AO703_16510) pncC 3571840..3572337 (-) 498 WP_013365051.1 nicotinamide-nucleotide amidase -
  AO703_RS16560 (AO703_16515) mltB 3572515..3573591 (-) 1077 WP_013365050.1 lytic murein transglycosylase B -
  AO703_RS16565 (AO703_16520) srlA 3573868..3574431 (+) 564 WP_013365049.1 PTS glucitol/sorbitol transporter subunit IIC -
  AO703_RS16570 (AO703_16525) - 3574428..3575390 (+) 963 WP_062741763.1 PTS glucitol/sorbitol transporter subunit IIB -
  AO703_RS16575 (AO703_16530) srlB 3575402..3575764 (+) 363 WP_013365047.1 PTS glucitol/sorbitol transporter subunit IIA -
  AO703_RS16580 (AO703_16535) srlD 3575782..3576561 (+) 780 WP_013365046.1 sorbitol-6-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37849.32 Da        Isoelectric Point: 4.8055

>NTDB_id=157967 AO703_RS16550 WP_013365052.1 3570708..3571766(-) (recA) [[Enterobacter] lignolyticus strain G5]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFFGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANAIAWLKENPAAAKEI
EKKVRELLLNNQDPTPAFTVDDNDVAETSEDF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=157967 AO703_RS16550 WP_013365052.1 3570708..3571766(-) (recA) [[Enterobacter] lignolyticus strain G5]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAACAATTCGGTAAAGGCTCTAT
CATGCGCCTGGGTGAAGACCGCTCCATGGATGTGGAAACTATCTCCACCGGCTCGCTTTCGCTGGATATCGCCCTGGGTG
CCGGCGGTTTACCGATGGGCCGTATTGTTGAAATTTACGGGCCGGAATCTTCCGGTAAAACCACGCTGACCCTGCAGGTG
ATCGCGGCGGCGCAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCCGAACACGCGCTGGACCCGATTTATGCCCGCAA
GCTGGGTGTCGATATCGACAACCTGCTGTGCTCCCAGCCGGACACCGGCGAGCAGGCGCTGGAAATCTGTGACGCACTGG
CGCGTTCCGGCGCGGTCGACGTTATCGTCGTCGACTCCGTCGCGGCGCTGACGCCGAAAGCGGAAATCGAAGGTGAAATC
GGCGACTCTCACATGGGCCTCGCGGCGCGTATGATGAGCCAGGCGATGCGTAAGCTGGCCGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATCGGCGTGATGTTTGGCAACCCGGAAACCACCACCGGGGGTA
ACGCGCTCAAATTCTACGCCTCCGTGCGTCTGGACATTCGTCGTATCGGCGCGGTGAAAGAGGGTGAAAACGTCGTCGGC
AGCGAAACCCGCGTGAAGGTCGTGAAAAACAAAATCGCGGCGCCGTTTAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGGATTAACTTCTTCGGCGAGCTGGTCGATCTCGGCGTGAAAGAGAAGCTGATCGAAAAAGCGGGCGCCTGGTATAGCT
ATAACGGCGAAAAAATCGGGCAGGGTAAAGCTAACGCGATTGCCTGGCTGAAGGAAAACCCGGCCGCCGCAAAAGAGATC
GAAAAGAAAGTTCGCGAACTGCTGCTCAACAACCAGGATCCTACTCCGGCGTTCACCGTTGACGATAACGACGTCGCGGA
AACCAGCGAAGATTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A806X6Z4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

80.226

100

0.807
  recA Vibrio cholerae strain A1552

80.226

100

0.807
  recA Acinetobacter baylyi ADP1

71.633

99.148

0.71
  recA Pseudomonas stutzeri DSM 10701

73.021

96.875

0.707
  recA Acinetobacter baumannii D1279779

74.924

92.898

0.696
  recA Glaesserella parasuis strain SC1401

68.661

99.716

0.685
  recA Neisseria gonorrhoeae MS11

69.325

92.614

0.642
  recA Neisseria gonorrhoeae MS11

69.325

92.614

0.642
  recA Neisseria gonorrhoeae strain FA1090

69.325

92.614

0.642
  recA Ralstonia pseudosolanacearum GMI1000

71.061

88.352

0.628
  recA Helicobacter pylori strain NCTC11637

62.018

95.739

0.594
  recA Helicobacter pylori 26695

61.721

95.739

0.591
  recA Streptococcus pneumoniae D39

63.158

91.761

0.58
  recA Streptococcus pneumoniae TIGR4

63.158

91.761

0.58
  recA Streptococcus pneumoniae R6

63.158

91.761

0.58
  recA Streptococcus pneumoniae Rx1

63.158

91.761

0.58
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.346

92.045

0.574
  recA Streptococcus mitis NCTC 12261

62.539

91.761

0.574
  recA Streptococcus mitis SK321

62.539

91.761

0.574
  recA Streptococcus pyogenes NZ131

62.154

92.33

0.574
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

91.193

0.571
  recA Lactococcus lactis subsp. cremoris KW2

62.229

91.761

0.571
  recA Streptococcus mutans UA159

61.846

92.33

0.571
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.06

94.602

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

92.33

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

91.193

0.56

Multiple sequence alignment