Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AOY20_RS12140 Genome accession   NZ_CP012808
Coordinates   2560608..2561648 (+) Length   346 a.a.
NCBI ID   WP_054582108.1    Uniprot ID   A0A0N9W0W6
Organism   Acinetobacter equi strain 114     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2555608..2566648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY20_RS12120 (AOY20_12120) - 2556616..2557839 (+) 1224 WP_054582104.1 ABC transporter permease -
  AOY20_RS12125 (AOY20_12125) - 2557832..2558563 (+) 732 WP_054582105.1 ABC transporter ATP-binding protein -
  AOY20_RS14575 - 2558639..2558890 (-) 252 Protein_2355 IS3 family transposase -
  AOY20_RS15185 - 2558961..2559089 (+) 129 Protein_2356 DNA polymerase V -
  AOY20_RS12130 (AOY20_12130) - 2559357..2560031 (+) 675 WP_054582106.1 HAD-IA family hydrolase -
  AOY20_RS12135 (AOY20_12135) - 2560024..2560464 (+) 441 WP_054582107.1 RNA-binding S4 domain-containing protein -
  AOY20_RS12140 (AOY20_12140) recA 2560608..2561648 (+) 1041 WP_054582108.1 recombinase RecA Machinery gene
  AOY20_RS12145 (AOY20_12145) - 2561717..2562331 (+) 615 WP_054582109.1 regulatory protein RecX -
  AOY20_RS12150 (AOY20_12150) - 2562736..2563567 (+) 832 Protein_2361 YbgF trimerization domain-containing protein -
  AOY20_RS12155 (AOY20_12155) lpxA 2563615..2564403 (-) 789 WP_054582110.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  AOY20_RS12160 (AOY20_12160) fabZ 2564406..2564888 (-) 483 WP_054582111.1 3-hydroxyacyl-ACP dehydratase FabZ -
  AOY20_RS12165 (AOY20_12165) lpxD 2564891..2565961 (-) 1071 WP_054582112.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  AOY20_RS12170 (AOY20_12170) - 2565965..2566456 (-) 492 WP_054582113.1 OmpH family outer membrane protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37449.91 Da        Isoelectric Point: 4.9374

>NTDB_id=157767 AOY20_RS12140 WP_054582108.1 2560608..2561648(+) (recA) [Acinetobacter equi strain 114]
MDENKSKALNAALSQIEKQFGKNSVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
ECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TRVKVVKNKMAPPFKEAVFQILYGKGINHLGELVDLAVQQEIIQKAGAWYSYQGSKIGQGKNNTIRHLEENPEMVKTIEA
IIRENLLTVGTPVEENDEAEPDLLDV

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=157767 AOY20_RS12140 WP_054582108.1 2560608..2561648(+) (recA) [Acinetobacter equi strain 114]
ATGGATGAAAATAAAAGCAAGGCGTTAAATGCGGCCTTAAGCCAAATTGAAAAGCAATTTGGTAAAAATTCAGTAATGCG
TCTTGGTGACAATACTGTTCAAGCCGTTGAAGCTGTTTCTACCGGTTCATTAACGCTAGATATCGCTTTAGGTATTGGTG
GTTTACCTAAAGGTCGTATTATTGAAATTTACGGCCCTGAATCTTCAGGTAAAACGACAATGACATTACAAGCGATTGCT
GAATGTCAAAAAGCTGGTGGAACATGTGCTTTTATTGATGCTGAACATGCTTTAGATCCACAATATGCCCGTAAACTTGG
CGTAGATATCGACAATCTTCTTGTTTCACAACCAGATAATGGTGAACAAGCATTAGAAATTGCCGACATGCTTGTACGTT
CAGGTGCAATTGACCTTATTGTTGTCGATTCTGTTGCTGCCTTAACCCCACGTGCTGAAATTGAAGGTGAAATGGGTGAT
TCCCACATGGGTCTTCAAGCACGTCTAATGAGCCAAGCATTACGTAAAATTACAGGTAATGCAAAACGTTCAAACTGTAT
GGTCATTTTCATTAACCAAATTCGTATGAAAATTGGTGTAATGTTTGGTAGCCCTGAAACCACAACAGGTGGTAATGCAC
TTAAATTCTATGCTTCTGTACGCTTAGATATTCGTCGTATTGGTCAAGTTAAAGAAGGCGATGAAATTGTTGGTTCAGAA
ACACGTGTTAAAGTTGTAAAAAATAAAATGGCTCCTCCATTTAAGGAAGCTGTTTTCCAAATTCTATATGGTAAAGGTAT
CAACCATCTTGGTGAACTTGTTGACTTAGCTGTACAGCAAGAAATCATCCAAAAAGCAGGTGCATGGTATTCATATCAGG
GAAGCAAGATTGGTCAAGGTAAAAACAATACTATTCGCCATCTTGAAGAAAACCCAGAAATGGTTAAAACCATTGAAGCA
ATCATCCGTGAAAATTTATTAACAGTAGGCACACCTGTTGAAGAAAATGATGAAGCTGAACCAGATTTACTTGATGTGTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0N9W0W6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

90.751

100

0.908
  recA Acinetobacter baylyi ADP1

89.08

100

0.896
  recA Pseudomonas stutzeri DSM 10701

74.138

100

0.746
  recA Vibrio cholerae strain A1552

74.312

94.509

0.702
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.312

94.509

0.702
  recA Glaesserella parasuis strain SC1401

68.895

99.422

0.685
  recA Neisseria gonorrhoeae MS11

65.805

100

0.662
  recA Neisseria gonorrhoeae MS11

65.805

100

0.662
  recA Neisseria gonorrhoeae strain FA1090

65.805

100

0.662
  recA Ralstonia pseudosolanacearum GMI1000

69.207

94.798

0.656
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.696

98.844

0.61
  recA Streptococcus pneumoniae R6

62.13

97.688

0.607
  recA Streptococcus pneumoniae Rx1

62.13

97.688

0.607
  recA Streptococcus pneumoniae D39

62.13

97.688

0.607
  recA Streptococcus pneumoniae TIGR4

62.13

97.688

0.607
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.84

95.665

0.601
  recA Helicobacter pylori strain NCTC11637

63.303

94.509

0.598
  recA Helicobacter pylori 26695

62.997

94.509

0.595
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.669

91.618

0.592
  recA Streptococcus mutans UA159

62.577

94.22

0.59
  recA Streptococcus mitis NCTC 12261

62.848

93.353

0.587
  recA Streptococcus mitis SK321

62.848

93.353

0.587
  recA Bacillus subtilis subsp. subtilis str. 168

62.112

93.064

0.578
  recA Streptococcus pyogenes NZ131

61.538

93.931

0.578
  recA Latilactobacillus sakei subsp. sakei 23K

59.813

92.775

0.555
  recA Lactococcus lactis subsp. cremoris KW2

58.824

93.353

0.549

Multiple sequence alignment