Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CDOMC_RS00680 Genome accession   NZ_CP012552
Coordinates   127429..128520 (+) Length   363 a.a.
NCBI ID   WP_172127040.1    Uniprot ID   A0A6G5R2A7
Organism   Campylobacter sp. RM16192     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 122429..133520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDOMC_RS00655 (CDOMC_0131) - 123098..124195 (+) 1098 WP_172127033.1 nicotinate phosphoribosyltransferase -
  CDOMC_RS00660 (CDOMC_0132) - 124233..125297 (-) 1065 WP_185768465.1 tetratricopeptide repeat protein -
  CDOMC_RS00665 (CDOMC_0133) - 125356..126129 (-) 774 WP_172127035.1 UDP-N-acetylmuramate dehydrogenase -
  CDOMC_RS00670 (CDOMC_0134) fliQ 126126..126392 (-) 267 WP_169941033.1 flagellar biosynthesis protein FliQ -
  CDOMC_RS00675 (CDOMC_0135) - 126393..127265 (-) 873 WP_172127037.1 menaquinone biosynthesis family protein -
  CDOMC_RS00680 (CDOMC_0136) recA 127429..128520 (+) 1092 WP_172127040.1 recombinase RecA Machinery gene
  CDOMC_RS00685 (CDOMC_0137) eno 128520..129770 (+) 1251 WP_172127042.1 phosphopyruvate hydratase -
  CDOMC_RS00690 (CDOMC_0138) - 129767..130033 (+) 267 WP_172127044.1 septum formation initiator -
  CDOMC_RS00695 (CDOMC_0139) - 130044..130835 (+) 792 WP_172127046.1 AMIN domain-containing protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38970.42 Da        Isoelectric Point: 5.0974

>NTDB_id=155127 CDOMC_RS00680 WP_172127040.1 127429..128520(+) (recA) [Campylobacter sp. RM16192]
MAAEKEDKKKVGSAELDADKKKALELALKQIDKSFGKGTVVRLGDREIEPIDSISTGSLGLDLALGIGGVPKGRIVEIYG
PESSGKTTLTLHIIAEAQKAGGVCAFVDAEHALDVKYAANLGVDTDNLYISQPDYGEQALDIVETLARSGAIDLIIVDSV
AALTPKNEIEGDMGDQHVGLQARLMSQALRKLTGILHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRIDV
RKIATLKQNEEPIGNRTKVKVAKNKVAPPFKVAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWFSYNANKLGQGRENA
KAYLKEHPEVAEEIVAAIKGSMGIDHLISSNGRDDDTTEAGEE

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=155127 CDOMC_RS00680 WP_172127040.1 127429..128520(+) (recA) [Campylobacter sp. RM16192]
ATGGCGGCAGAAAAAGAGGATAAGAAAAAAGTAGGATCGGCTGAACTTGATGCTGATAAGAAAAAAGCGCTAGAGCTAGC
CTTAAAACAGATTGATAAGTCATTTGGTAAAGGCACGGTTGTCAGACTTGGAGATAGAGAGATAGAGCCGATAGATAGTA
TATCTACAGGTTCACTAGGACTTGATCTGGCACTTGGAATAGGTGGAGTGCCAAAAGGAAGAATCGTAGAAATTTACGGA
CCGGAGAGTTCAGGAAAGACTACATTGACCCTTCATATAATAGCTGAAGCTCAAAAGGCCGGTGGAGTATGTGCTTTCGT
CGATGCTGAACATGCTCTTGATGTAAAATATGCCGCAAATTTAGGCGTAGATACGGATAATCTTTATATCTCTCAGCCAG
ATTATGGCGAACAAGCGCTTGATATAGTAGAGACTTTGGCTAGAAGTGGGGCTATTGATCTAATAATCGTTGACAGTGTT
GCCGCACTCACTCCTAAAAACGAGATAGAAGGCGATATGGGTGATCAGCACGTAGGTCTTCAGGCTCGCTTGATGTCTCA
AGCTCTTAGAAAGCTCACCGGAATTTTACACAAGATGAATACAACTGTAATATTCATCAATCAAATTCGTATGAAAATAG
GCGCTATGGGATATGGCACGCCAGAGACTACGACAGGTGGAAACGCATTGAAATTTTATGCCTCCGTGAGAATAGATGTC
CGTAAAATCGCTACTTTAAAACAAAACGAAGAACCTATAGGAAATCGCACAAAAGTAAAAGTAGCAAAAAATAAAGTAGC
GCCTCCTTTTAAAGTAGCTGAATTTGACATAATGTTTGGTGAAGGAATCAGTAAAGAGGGCGAGATAATAGACTATGGAG
TAAAGCTTGATATAGTCGATAAGAGCGGTGCTTGGTTTAGTTATAATGCCAATAAGCTTGGACAAGGAAGAGAGAACGCA
AAGGCTTATTTAAAAGAGCATCCAGAGGTTGCCGAAGAGATAGTGGCTGCCATAAAGGGCTCCATGGGAATTGATCACTT
GATAAGCTCAAATGGAAGAGATGATGATACAACTGAAGCAGGAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G5R2A7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

81.977

94.766

0.777
  recA Helicobacter pylori 26695

80.183

90.358

0.725
  recA Helicobacter pylori strain NCTC11637

79.878

90.358

0.722
  recA Neisseria gonorrhoeae MS11

64.74

95.317

0.617
  recA Neisseria gonorrhoeae MS11

64.74

95.317

0.617
  recA Neisseria gonorrhoeae strain FA1090

64.74

95.317

0.617
  recA Ralstonia pseudosolanacearum GMI1000

63.158

94.215

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.138

90.083

0.587
  recA Pseudomonas stutzeri DSM 10701

65.138

90.083

0.587
  recA Glaesserella parasuis strain SC1401

65.635

88.981

0.584
  recA Acinetobacter baylyi ADP1

65.432

89.256

0.584
  recA Acinetobacter baumannii D1279779

64.815

89.256

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

62.614

90.634

0.567
  recA Vibrio cholerae strain A1552

64.263

87.879

0.565
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.263

87.879

0.565
  recA Streptococcus pneumoniae D39

58.929

92.562

0.545
  recA Streptococcus pneumoniae Rx1

58.929

92.562

0.545
  recA Streptococcus pneumoniae R6

58.929

92.562

0.545
  recA Streptococcus pneumoniae TIGR4

58.929

92.562

0.545
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.941

93.664

0.543
  recA Streptococcus pyogenes NZ131

59.878

90.634

0.543
  recA Lactococcus lactis subsp. cremoris KW2

59.215

91.185

0.54
  recA Streptococcus mitis SK321

58.333

92.562

0.54
  recA Streptococcus mitis NCTC 12261

58.036

92.562

0.537
  recA Streptococcus mutans UA159

58.182

90.909

0.529
  recA Latilactobacillus sakei subsp. sakei 23K

57.975

89.807

0.521

Multiple sequence alignment