Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AMD29_RS10170 Genome accession   NZ_CP012419
Coordinates   1984793..1985932 (-) Length   379 a.a.
NCBI ID   WP_017647882.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SG-M1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1979793..1990932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD29_RS10140 (AMD29_10135) - 1981157..1982698 (-) 1542 WP_000230040.1 membrane protein -
  AMD29_RS11865 (AMD29_10140) - 1982744..1982866 (-) 123 WP_001285708.1 hypothetical protein -
  AMD29_RS10150 (AMD29_10145) - 1982949..1983266 (-) 318 WP_000940931.1 DUF1292 domain-containing protein -
  AMD29_RS10155 (AMD29_10150) ruvX 1983292..1983711 (-) 420 WP_001222109.1 Holliday junction resolvase RuvX -
  AMD29_RS10160 (AMD29_10155) - 1983711..1983977 (-) 267 WP_000507056.1 IreB family regulatory phosphoprotein -
  AMD29_RS10165 (AMD29_10160) spx 1984179..1984577 (-) 399 WP_000591161.1 transcriptional regulator Spx -
  AMD29_RS10170 (AMD29_10165) recA 1984793..1985932 (-) 1140 WP_017647882.1 recombinase RecA Machinery gene
  AMD29_RS10175 (AMD29_10170) cinA 1986006..1987265 (-) 1260 WP_001200975.1 competence/damage-inducible protein A Machinery gene
  AMD29_RS10180 (AMD29_10175) - 1987354..1987905 (-) 552 WP_000817341.1 DNA-3-methyladenine glycosylase I -
  AMD29_RS10185 (AMD29_10180) ruvA 1987928..1988518 (-) 591 WP_000272490.1 Holliday junction branch migration protein RuvA -
  AMD29_RS10190 (AMD29_10185) - 1988520..1989752 (-) 1233 WP_000657472.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 40916.50 Da        Isoelectric Point: 5.2446

>NTDB_id=154415 AMD29_RS10170 WP_017647882.1 1984793..1985932(-) (recA) [Streptococcus agalactiae strain SG-M1]
MAKKTKKAEEITKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIVEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRG
NTQIKGTGEHKDHNVGKETKIKVVKNKVAPPFREAFVEIMYGEGISRTGELIKIASDLDIIQKAGAWYSYNGEKIGQGSE
NAKKYLADNPAIFDEIDHKVRVHFGMTEDDSPVQSELVKEKNEADDLVLDLDNAIEIEE

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=154415 AMD29_RS10170 WP_017647882.1 1984793..1985932(-) (recA) [Streptococcus agalactiae strain SG-M1]
TTGGCTAAAAAAACGAAAAAAGCAGAAGAAATTACTAAGAAATTCGGTGATGAACGTCGAAAAGCCTTAGATGATGCTTT
GAAAAATATTGAAAAAGATTTTGGTAAGGGCGCAGTGATGCGCTTAGGTGAGCGAGCTGAACAAAAGGTTCAAGTAATGA
GTTCAGGTTCTCTTGCTTTAGATATCGCTTTAGGAGCAGGTGGATATCCTAAAGGACGTATCGTCGAAATTTATGGACCA
GAGTCATCTGGTAAAACAACGGTTGCCCTTCATGCCGTAGCTCAAGCCCAAAAGGAAGGTGGGATTGCTGCCTTTATTGA
TGCTGAGCACGCTCTTGACCCAGCCTATGCTGCGGCTCTTGGAGTTAATATTGATGAGTTACTCTTGTCTCAACCTGACT
CAGGTGAGCAAGGTCTTGAAATTGCAGGTAAATTGATTGATTCAGGCGCAGTTGATTTAGTTGTTGTCGATTCAGTTGCA
GCCCTTGTTCCTCGTGCTGAGATTGATGGTGATATTGGTGACAGCCACGTTGGTTTGCAAGCTCGTATGATGAGTCAAGC
AATGCGTAAATTGTCAGCATCCATTAACAAGACAAAGACAATCGCAATTTTTATCAACCAGCTAAGGGAAAAAGTAGGCG
TTATGTTTGGTAACCCTGAAACAACACCTGGTGGTCGTGCTTTGAAATTTTATTCATCGGTTCGTCTAGATGTTCGTGGT
AATACTCAAATCAAGGGGACTGGTGAGCATAAAGATCATAATGTTGGTAAAGAGACAAAAATCAAAGTTGTTAAAAATAA
AGTTGCTCCACCATTCCGTGAAGCTTTTGTCGAAATTATGTATGGTGAAGGTATTTCTCGCACGGGTGAGTTAATTAAAA
TTGCTAGTGATTTGGATATTATCCAAAAAGCAGGTGCATGGTACTCATATAATGGTGAGAAAATTGGACAAGGTTCTGAA
AATGCCAAAAAATATTTAGCAGATAATCCAGCAATTTTTGATGAAATTGACCATAAAGTGCGCGTGCACTTTGGAATGAC
TGAAGATGATTCGCCAGTTCAGTCTGAGCTCGTTAAAGAAAAAAATGAAGCTGATGATCTTGTTTTAGATTTGGACAATG
CTATTGAAATTGAGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

89.295

100

0.902
  recA Streptococcus pyogenes NZ131

89.182

100

0.892
  recA Streptococcus mitis NCTC 12261

85.195

100

0.865
  recA Streptococcus pneumoniae R6

84.156

100

0.855
  recA Streptococcus pneumoniae Rx1

84.156

100

0.855
  recA Streptococcus pneumoniae D39

84.156

100

0.855
  recA Streptococcus pneumoniae TIGR4

84.156

100

0.855
  recA Streptococcus mitis SK321

85.039

100

0.855
  recA Lactococcus lactis subsp. cremoris KW2

76.724

91.821

0.704
  recA Latilactobacillus sakei subsp. sakei 23K

69.118

89.71

0.62
  recA Bacillus subtilis subsp. subtilis str. 168

68.997

86.807

0.599
  recA Acinetobacter baumannii D1279779

59.04

93.404

0.551
  recA Neisseria gonorrhoeae MS11

63.142

87.335

0.551
  recA Neisseria gonorrhoeae MS11

63.142

87.335

0.551
  recA Neisseria gonorrhoeae strain FA1090

63.142

87.335

0.551
  recA Vibrio cholerae strain A1552

59.429

92.348

0.549
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.429

92.348

0.549
  recA Glaesserella parasuis strain SC1401

60.294

89.71

0.541
  recA Acinetobacter baylyi ADP1

62.769

85.752

0.538
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.398

86.807

0.533
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.229

85.224

0.53
  recA Pseudomonas stutzeri DSM 10701

57.849

90.765

0.525
  recA Ralstonia pseudosolanacearum GMI1000

59.517

87.335

0.52
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.478

89.974

0.517
  recA Helicobacter pylori strain NCTC11637

56.522

91.029

0.515
  recA Helicobacter pylori 26695

56.522

91.029

0.515

Multiple sequence alignment