Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   amyaer_RS14960 Genome accession   NZ_CP012375
Coordinates   3055894..3056961 (+) Length   355 a.a.
NCBI ID   WP_046662676.1    Uniprot ID   A0A0F6RMN5
Organism   Microcystis aeruginosa NIES-2481     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3050894..3061961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  amyaer_RS14930 (amyaer_3100) - 3051234..3051959 (-) 726 WP_002759138.1 2-phosphosulfolactate phosphatase family protein -
  amyaer_RS14940 (amyaer_3101) - 3052300..3053508 (+) 1209 WP_046662673.1 RNA-guided endonuclease TnpB family protein -
  amyaer_RS14950 (amyaer_3102) - 3053892..3054086 (+) 195 WP_046662674.1 hypothetical protein -
  amyaer_RS22075 (amyaer_3104) - 3054367..3054537 (-) 171 WP_158524802.1 hypothetical protein -
  amyaer_RS14955 (amyaer_3105) - 3054814..3055767 (+) 954 WP_046662675.1 aldo/keto reductase -
  amyaer_RS14960 (amyaer_3106) recA 3055894..3056961 (+) 1068 WP_046662676.1 recombinase RecA Machinery gene
  amyaer_RS14965 (amyaer_3107) - 3056985..3057581 (-) 597 WP_046662677.1 hypothetical protein -
  amyaer_RS14970 (amyaer_3108) - 3057626..3058495 (-) 870 WP_066030000.1 bile acid:sodium symporter family protein -
  amyaer_RS14975 (amyaer_3109) - 3058750..3058947 (-) 198 WP_071890122.1 hypothetical protein -
  amyaer_RS14985 (amyaer_3112) - 3059320..3059535 (+) 216 WP_066030001.1 hypothetical protein -
  amyaer_RS14990 (amyaer_3113) - 3059708..3060181 (+) 474 WP_066030002.1 CRR6 family NdhI maturation factor -
  amyaer_RS14995 (amyaer_3114) - 3060276..3061484 (+) 1209 WP_066030003.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  amyaer_RS22960 (amyaer_3115) - 3061690..3061884 (-) 195 WP_046662681.1 hypothetical protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38183.63 Da        Isoelectric Point: 4.7498

>NTDB_id=153945 amyaer_RS14960 WP_046662676.1 3055894..3056961(+) (recA) [Microcystis aeruginosa NIES-2481]
MATMTNNSDRDKALGLVLNQIERNFGKGSIMRLGDATRMRVETVPSGALTLDMALGGGLPKGRIVEIYGPESSGKTTLAL
HAIAEVQKAGGVAAFVDAEHALDPTYSDVLGVDINNLLVAQPDTGEAALEIVDQLVRSSAVDIVVIDSVAALVPRAEIEG
EMGDNQVGLQARLMSKALRKIAGNIGKSGCVVIFLNQLRQKIGVTYGNPEVTTGGTALKFYASVRLDIRRIQTLKKGTEG
EYGIRAKVKVAKNKVAPPFRIAEFDIIFGKGISQVGCMLDIAEQTNVVTRKGAWYSYNGENIAQGRDNAVKYLEEKPEVA
AEIEKLLRDKLDMGSVPFPTEPADEDEEDDLEPEV

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=153945 amyaer_RS14960 WP_046662676.1 3055894..3056961(+) (recA) [Microcystis aeruginosa NIES-2481]
ATGGCGACAATGACAAATAACTCCGATCGAGATAAGGCCTTGGGTTTAGTCTTAAATCAAATCGAGCGCAACTTTGGCAA
AGGTTCGATTATGCGTTTAGGAGACGCCACCCGGATGCGGGTGGAAACCGTGCCTAGTGGTGCCTTAACCCTAGATATGG
CCTTGGGTGGCGGTTTACCGAAAGGCCGCATCGTCGAAATTTACGGGCCGGAAAGTTCTGGAAAAACCACCTTAGCCCTC
CATGCGATCGCAGAAGTGCAGAAAGCTGGGGGAGTGGCGGCCTTTGTCGATGCGGAACACGCTTTAGATCCCACCTATTC
CGATGTTTTAGGGGTAGATATCAATAATTTACTGGTGGCACAACCGGACACGGGGGAGGCAGCCTTAGAAATAGTTGACC
AGTTAGTGCGTTCTTCGGCCGTGGATATCGTCGTCATCGACTCGGTGGCCGCTTTAGTGCCACGGGCGGAAATTGAAGGG
GAAATGGGGGATAATCAGGTGGGATTGCAGGCCCGTTTGATGAGTAAAGCCCTGCGAAAAATTGCCGGTAATATTGGTAA
ATCCGGTTGTGTGGTGATTTTCCTCAACCAACTGCGGCAAAAAATCGGTGTCACCTACGGTAATCCTGAAGTGACCACTG
GAGGAACGGCCTTAAAATTTTATGCCTCGGTGCGTTTAGATATCCGTCGCATTCAAACTTTGAAAAAAGGCACGGAAGGG
GAATACGGAATTCGGGCTAAAGTTAAGGTGGCTAAAAATAAAGTTGCGCCTCCTTTCCGGATTGCTGAATTTGATATTAT
CTTCGGTAAAGGCATTTCCCAAGTGGGTTGTATGCTCGATATCGCCGAACAAACCAACGTGGTTACTCGTAAAGGGGCAT
GGTATAGCTATAATGGCGAAAATATTGCCCAGGGTCGCGATAATGCCGTTAAATATCTTGAAGAAAAGCCAGAAGTAGCG
GCGGAAATTGAGAAGTTATTGCGGGATAAATTAGACATGGGTTCGGTTCCTTTCCCCACGGAACCGGCCGATGAGGACGA
GGAGGACGATCTGGAACCAGAAGTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F6RMN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

62.209

96.901

0.603
  recA Acinetobacter baumannii D1279779

60.405

97.465

0.589
  recA Ralstonia pseudosolanacearum GMI1000

62.763

93.803

0.589
  recA Pseudomonas stutzeri DSM 10701

60.465

96.901

0.586
  recA Helicobacter pylori 26695

57.429

98.592

0.566
  recA Helicobacter pylori strain NCTC11637

57.429

98.592

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

57.925

97.746

0.566
  recA Neisseria gonorrhoeae MS11

57.143

98.592

0.563
  recA Neisseria gonorrhoeae MS11

57.143

98.592

0.563
  recA Neisseria gonorrhoeae strain FA1090

57.143

98.592

0.563
  recA Glaesserella parasuis strain SC1401

57.061

97.746

0.558
  recA Bacillus subtilis subsp. subtilis str. 168

61.3

90.986

0.558
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.91

94.366

0.546
  recA Streptococcus pneumoniae R6

58.308

93.239

0.544
  recA Streptococcus pneumoniae Rx1

58.308

93.239

0.544
  recA Streptococcus pneumoniae D39

58.308

93.239

0.544
  recA Streptococcus pneumoniae TIGR4

58.308

93.239

0.544
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.202

91.831

0.544
  recA Vibrio cholerae strain A1552

59.202

91.831

0.544
  recA Streptococcus mitis SK321

58.589

91.831

0.538
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.523

96.901

0.538
  recA Lactococcus lactis subsp. cremoris KW2

57.576

92.958

0.535
  recA Streptococcus mitis NCTC 12261

57.975

91.831

0.532
  recA Streptococcus pyogenes NZ131

57.012

92.394

0.527
  recA Streptococcus mutans UA159

56.481

91.268

0.515
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55

90.141

0.496

Multiple sequence alignment