Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | CDIF29020_RS06810 | Genome accession | NZ_CP012325 |
| Coordinates | 1382296..1383342 (+) | Length | 348 a.a. |
| NCBI ID | WP_003419530.1 | Uniprot ID | A0AAX3GVV5 |
| Organism | Clostridioides difficile strain DSM 29020 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1377506..1428140 | 1382296..1383342 | within | 0 |
Gene organization within MGE regions
Location: 1377506..1428140
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF29020_RS06795 (CDIF29020_01333) | mnmH | 1379114..1380172 (+) | 1059 | WP_003419524.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| CDIF29020_RS06800 (CDIF29020_01334) | rimO | 1380166..1381500 (+) | 1335 | WP_003419527.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| CDIF29020_RS06805 (CDIF29020_01335) | pgsA | 1381487..1382029 (+) | 543 | WP_009905407.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| CDIF29020_RS06810 (CDIF29020_01336) | recA | 1382296..1383342 (+) | 1047 | WP_003419530.1 | recombinase RecA | Machinery gene |
| CDIF29020_RS06815 (CDIF29020_01337) | rny | 1383518..1385059 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| CDIF29020_RS06820 (CDIF29020_01338) | - | 1385369..1387705 (+) | 2337 | WP_003419542.1 | diguanylate cyclase | - |
| CDIF29020_RS06830 | - | 1388511..1388609 (+) | 99 | Protein_1211 | transposase | - |
| CDIF29020_RS06835 (CDIF29020_01339) | tnpB | 1388611..1389729 (+) | 1119 | WP_041160402.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| CDIF29020_RS06845 (CDIF29020_01340) | - | 1390061..1391842 (+) | 1782 | WP_003419546.1 | UvrD-helicase domain-containing protein | - |
| CDIF29020_RS06850 (CDIF29020_01341) | lepB | 1391922..1392452 (-) | 531 | WP_009905409.1 | signal peptidase I | - |
| CDIF29020_RS06855 (CDIF29020_01342) | - | 1392492..1393316 (-) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| CDIF29020_RS06860 (CDIF29020_01343) | - | 1393573..1394484 (+) | 912 | WP_022615208.1 | tyrosine-type recombinase/integrase | - |
| CDIF29020_RS06865 (CDIF29020_01344) | purB | 1394623..1396068 (+) | 1446 | WP_003419557.1 | adenylosuccinate lyase | - |
| CDIF29020_RS06870 (CDIF29020_01345) | - | 1396369..1396821 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CDIF29020_RS06875 (CDIF29020_01346) | - | 1397040..1398236 (-) | 1197 | WP_003419570.1 | pyridoxal phosphate-dependent aminotransferase | - |
| CDIF29020_RS06880 (CDIF29020_01347) | galT | 1398621..1399571 (+) | 951 | WP_003419573.1 | galactose-1-phosphate uridylyltransferase | - |
| CDIF29020_RS06885 (CDIF29020_01348) | - | 1399692..1400444 (+) | 753 | WP_003419575.1 | exodeoxyribonuclease III | - |
| CDIF29020_RS06890 (CDIF29020_01349) | - | 1400536..1401312 (-) | 777 | WP_003419578.1 | 3'-5' exonuclease | - |
| CDIF29020_RS06895 (CDIF29020_01350) | - | 1401627..1403525 (+) | 1899 | WP_003419583.1 | glutamine synthetase | - |
| CDIF29020_RS06900 (CDIF29020_01351) | - | 1403653..1404774 (-) | 1122 | WP_003419591.1 | MGDG synthase family glycosyltransferase | - |
| CDIF29020_RS06905 (CDIF29020_01352) | - | 1404973..1405305 (+) | 333 | WP_009905416.1 | PadR family transcriptional regulator | - |
| CDIF29020_RS06910 (CDIF29020_01353) | - | 1405292..1406350 (+) | 1059 | WP_003419595.1 | DUF1700 domain-containing protein | - |
| CDIF29020_RS06915 (CDIF29020_01354) | - | 1406343..1407413 (+) | 1071 | WP_003419596.1 | DUF4097 family beta strand repeat-containing protein | - |
| CDIF29020_RS06920 (CDIF29020_01355) | - | 1407515..1408051 (+) | 537 | WP_003419598.1 | hypothetical protein | - |
| CDIF29020_RS06925 (CDIF29020_01356) | - | 1408171..1408878 (+) | 708 | WP_009905418.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| CDIF29020_RS06930 (CDIF29020_01357) | - | 1408880..1409599 (+) | 720 | WP_003419603.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| CDIF29020_RS06935 (CDIF29020_01358) | - | 1409601..1410371 (+) | 771 | WP_003419609.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| CDIF29020_RS06940 (CDIF29020_01359) | - | 1410505..1411896 (+) | 1392 | WP_029158131.1 | sensor histidine kinase | - |
| CDIF29020_RS06945 (CDIF29020_01360) | - | 1411972..1412793 (-) | 822 | WP_003419615.1 | pyridoxamine kinase | - |
| CDIF29020_RS06950 (CDIF29020_01361) | - | 1413044..1414198 (+) | 1155 | WP_009905420.1 | amidase domain-containing protein | - |
| CDIF29020_RS06955 (CDIF29020_01362) | - | 1414381..1414581 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| CDIF29020_RS06960 (CDIF29020_01363) | - | 1415002..1415430 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| CDIF29020_RS06965 (CDIF29020_01364) | - | 1415573..1416328 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| CDIF29020_RS06975 (CDIF29020_01366) | - | 1417029..1417535 (-) | 507 | WP_003419636.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIF29020_RS06980 (CDIF29020_01367) | - | 1417617..1417937 (-) | 321 | WP_003419639.1 | XRE family transcriptional regulator | - |
| CDIF29020_RS06985 (CDIF29020_01368) | - | 1418106..1418303 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| CDIF29020_RS06990 (CDIF29020_01369) | - | 1418407..1418847 (+) | 441 | WP_003419643.1 | hypothetical protein | - |
| CDIF29020_RS06995 (CDIF29020_01370) | - | 1419096..1419539 (+) | 444 | WP_003419644.1 | phage tail terminator family protein | - |
| CDIF29020_RS07000 (CDIF29020_01371) | - | 1419544..1420608 (+) | 1065 | WP_003419645.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| CDIF29020_RS07005 (CDIF29020_01372) | - | 1420622..1421050 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
| CDIF29020_RS07010 (CDIF29020_01373) | - | 1421164..1421610 (+) | 447 | WP_003419647.1 | phage tail assembly chaperone | - |
| CDIF29020_RS07015 | - | 1421637..1421804 (+) | 168 | WP_003419648.1 | hypothetical protein | - |
| CDIF29020_RS07020 (CDIF29020_01374) | - | 1421804..1424257 (+) | 2454 | WP_003419649.1 | hypothetical protein | - |
| CDIF29020_RS07025 (CDIF29020_01375) | - | 1424257..1424679 (+) | 423 | WP_003419651.1 | phage baseplate protein | - |
| CDIF29020_RS07030 (CDIF29020_01376) | - | 1424961..1426490 (+) | 1530 | WP_003419653.1 | NlpC/P60 family protein | - |
| CDIF29020_RS07035 (CDIF29020_01377) | - | 1426506..1426832 (+) | 327 | WP_003419655.1 | DUF2577 family protein | - |
| CDIF29020_RS07040 (CDIF29020_01378) | - | 1426832..1427260 (+) | 429 | WP_003419656.1 | DUF2634 domain-containing protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37387.68 Da Isoelectric Point: 4.8236
>NTDB_id=153399 CDIF29020_RS06810 WP_003419530.1 1382296..1383342(+) (recA) [Clostridioides difficile strain DSM 29020]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=153399 CDIF29020_RS06810 WP_003419530.1 1382296..1383342(+) (recA) [Clostridioides difficile strain DSM 29020]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.