Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | CDIF28669_RS06820 | Genome accession | NZ_CP012323 |
| Coordinates | 1403477..1404523 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain DSM 28669 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1377972..1439739 | 1403477..1404523 | within | 0 |
Gene organization within MGE regions
Location: 1377972..1439739
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF28669_RS06710 (CDIF28669_01326) | rimP | 1381720..1382181 (+) | 462 | WP_003428240.1 | ribosome maturation factor RimP | - |
| CDIF28669_RS06715 (CDIF28669_01327) | nusA | 1382211..1383365 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| CDIF28669_RS06720 (CDIF28669_01328) | rnpM | 1383372..1383653 (+) | 282 | WP_003428236.1 | RNase P modulator RnpM | - |
| CDIF28669_RS06725 (CDIF28669_01329) | - | 1383643..1383954 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| CDIF28669_RS06730 (CDIF28669_01330) | infB | 1383976..1385916 (+) | 1941 | WP_003428235.1 | translation initiation factor IF-2 | - |
| CDIF28669_RS06735 (CDIF28669_01331) | rbfA | 1385959..1386339 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| CDIF28669_RS06740 (CDIF28669_01332) | - | 1386320..1387303 (+) | 984 | WP_003428233.1 | DHH family phosphoesterase | - |
| CDIF28669_RS06745 (CDIF28669_01333) | truB | 1387316..1388221 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| CDIF28669_RS06750 (CDIF28669_01334) | - | 1388352..1389281 (+) | 930 | WP_003428231.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| CDIF28669_RS06760 (CDIF28669_01335) | rpsO | 1389385..1389642 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| CDIF28669_RS06765 (CDIF28669_01336) | - | 1389882..1390727 (+) | 846 | WP_022616925.1 | DegV family protein | - |
| CDIF28669_RS06770 (CDIF28669_01337) | pnp | 1390852..1392963 (+) | 2112 | WP_022616926.1 | polyribonucleotide nucleotidyltransferase | - |
| CDIF28669_RS06775 (CDIF28669_01338) | - | 1393229..1393972 (+) | 744 | WP_003428228.1 | polysaccharide deacetylase family protein | - |
| CDIF28669_RS06780 (CDIF28669_01339) | - | 1394130..1395377 (+) | 1248 | WP_003428227.1 | M16 family metallopeptidase | - |
| CDIF28669_RS06785 (CDIF28669_01340) | - | 1395412..1395657 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| CDIF28669_RS06790 (CDIF28669_01341) | dapG | 1395667..1396890 (+) | 1224 | WP_003428226.1 | aspartate kinase | - |
| CDIF28669_RS06795 (CDIF28669_01342) | - | 1397003..1397737 (+) | 735 | WP_003428224.1 | ClpP family protease | - |
| CDIF28669_RS06800 (CDIF28669_01343) | - | 1397860..1400271 (+) | 2412 | WP_070112732.1 | FtsK/SpoIIIE family DNA translocase | - |
| CDIF28669_RS06805 (CDIF28669_01344) | mnmH | 1400274..1401332 (+) | 1059 | WP_003428222.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| CDIF28669_RS06810 (CDIF28669_01345) | rimO | 1401326..1402660 (+) | 1335 | WP_003428221.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| CDIF28669_RS06815 (CDIF28669_01346) | pgsA | 1402647..1403189 (+) | 543 | WP_021387802.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| CDIF28669_RS06820 (CDIF28669_01347) | recA | 1403477..1404523 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| CDIF28669_RS06825 (CDIF28669_01348) | rny | 1404699..1406240 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| CDIF28669_RS06830 (CDIF28669_01349) | - | 1406875..1408656 (+) | 1782 | WP_077723397.1 | UvrD-helicase domain-containing protein | - |
| CDIF28669_RS06835 (CDIF28669_01350) | lepB | 1408738..1409268 (-) | 531 | WP_021387803.1 | signal peptidase I | - |
| CDIF28669_RS06840 (CDIF28669_01351) | - | 1409308..1410132 (-) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| CDIF28669_RS06845 (CDIF28669_01352) | - | 1410389..1411297 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| CDIF28669_RS06850 (CDIF28669_01353) | purB | 1411441..1412886 (+) | 1446 | WP_009889111.1 | adenylosuccinate lyase | - |
| CDIF28669_RS06855 (CDIF28669_01354) | - | 1413197..1413649 (+) | 453 | WP_003428210.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CDIF28669_RS06860 (CDIF28669_01355) | - | 1414053..1415630 (+) | 1578 | WP_077723396.1 | PTS transporter subunit EIIC | - |
| CDIF28669_RS06865 (CDIF28669_01356) | - | 1415778..1416530 (+) | 753 | WP_022616930.1 | MurR/RpiR family transcriptional regulator | - |
| CDIF28669_RS06870 (CDIF28669_01357) | - | 1416663..1418030 (+) | 1368 | WP_330388685.1 | 6-phospho-alpha-glucosidase | - |
| CDIF28669_RS06875 (CDIF28669_01358) | - | 1418121..1419317 (-) | 1197 | WP_003428206.1 | pyridoxal phosphate-dependent aminotransferase | - |
| CDIF28669_RS06880 (CDIF28669_01359) | galT | 1419702..1420652 (+) | 951 | WP_003428205.1 | galactose-1-phosphate uridylyltransferase | - |
| CDIF28669_RS06885 (CDIF28669_01360) | - | 1420805..1421557 (+) | 753 | WP_003428204.1 | exodeoxyribonuclease III | - |
| CDIF28669_RS06890 (CDIF28669_01361) | - | 1421649..1422425 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| CDIF28669_RS06895 (CDIF28669_01362) | - | 1422740..1424638 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| CDIF28669_RS06900 (CDIF28669_01363) | - | 1424766..1425887 (-) | 1122 | WP_003428201.1 | MGDG synthase family glycosyltransferase | - |
| CDIF28669_RS06905 (CDIF28669_01364) | - | 1426086..1426418 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| CDIF28669_RS06910 (CDIF28669_01365) | - | 1426405..1427463 (+) | 1059 | WP_003428198.1 | DUF1700 domain-containing protein | - |
| CDIF28669_RS06915 (CDIF28669_01366) | - | 1427456..1428526 (+) | 1071 | WP_022616932.1 | DUF4097 family beta strand repeat-containing protein | - |
| CDIF28669_RS06920 (CDIF28669_01367) | - | 1428628..1429164 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| CDIF28669_RS06925 (CDIF28669_01368) | - | 1429280..1429987 (+) | 708 | WP_021393263.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| CDIF28669_RS06930 (CDIF28669_01369) | - | 1429989..1430705 (+) | 717 | WP_022616933.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| CDIF28669_RS06935 (CDIF28669_01370) | - | 1430707..1431465 (+) | 759 | WP_021427419.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| CDIF28669_RS06940 (CDIF28669_01371) | - | 1431600..1432988 (+) | 1389 | WP_021387809.1 | two-component system sensor histidine kinase | - |
| CDIF28669_RS06945 (CDIF28669_01372) | - | 1433064..1433885 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| CDIF28669_RS06950 (CDIF28669_01373) | - | 1434136..1435290 (+) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| CDIF28669_RS06955 (CDIF28669_01374) | - | 1435473..1435673 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| CDIF28669_RS06960 (CDIF28669_01375) | - | 1436094..1436522 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| CDIF28669_RS06965 (CDIF28669_01376) | - | 1436665..1437420 (-) | 756 | WP_021387811.1 | peptidylprolyl isomerase | - |
| CDIF28669_RS06975 (CDIF28669_01378) | - | 1438121..1438627 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIF28669_RS06980 (CDIF28669_01379) | - | 1438709..1439029 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| CDIF28669_RS06985 (CDIF28669_01380) | - | 1439198..1439395 (+) | 198 | WP_022616935.1 | helix-turn-helix transcriptional regulator | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=153383 CDIF28669_RS06820 WP_003428218.1 1403477..1404523(+) (recA) [Clostridioides difficile strain DSM 28669]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=153383 CDIF28669_RS06820 WP_003428218.1 1403477..1404523(+) (recA) [Clostridioides difficile strain DSM 28669]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGACAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGACAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.