Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | CDIF28670_RS07210 | Genome accession | NZ_CP012312 |
| Coordinates | 1448125..1449171 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain DSM 28670 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1414489..1486054 | 1448125..1449171 | within | 0 |
Gene organization within MGE regions
Location: 1414489..1486054
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF28670_RS07055 (CDIF28670_01401) | - | 1414537..1414935 (+) | 399 | WP_003428254.1 | spore germination protein GerW family protein | - |
| CDIF28670_RS07060 (CDIF28670_01402) | - | 1415183..1415623 (+) | 441 | WP_003419459.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CDIF28670_RS07065 (CDIF28670_01403) | - | 1415639..1417090 (+) | 1452 | WP_118712284.1 | leucyl aminopeptidase | - |
| CDIF28670_RS07070 (CDIF28670_01404) | - | 1417181..1417849 (-) | 669 | WP_003428250.1 | YwaF family protein | - |
| CDIF28670_RS07075 (CDIF28670_01405) | - | 1418118..1418258 (+) | 141 | WP_003419462.1 | hypothetical protein | - |
| CDIF28670_RS07080 (CDIF28670_01406) | - | 1418433..1418753 (-) | 321 | WP_003428248.1 | MazG-like family protein | - |
| CDIF28670_RS07085 (CDIF28670_01407) | - | 1418873..1419610 (-) | 738 | WP_003428245.1 | NAD-dependent protein deacylase | - |
| CDIF28670_RS07090 (CDIF28670_01408) | acd | 1419825..1421648 (+) | 1824 | WP_070117384.1 | N-acetylglucosaminidase | - |
| CDIF28670_RS07095 (CDIF28670_01409) | - | 1421863..1426161 (+) | 4299 | WP_003428241.1 | PolC-type DNA polymerase III | - |
| CDIF28670_RS07100 (CDIF28670_01410) | rimP | 1426365..1426826 (+) | 462 | WP_003428240.1 | ribosome maturation factor RimP | - |
| CDIF28670_RS07105 (CDIF28670_01411) | nusA | 1426856..1428010 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| CDIF28670_RS07110 (CDIF28670_01412) | rnpM | 1428017..1428298 (+) | 282 | WP_003419469.1 | RNase P modulator RnpM | - |
| CDIF28670_RS07115 (CDIF28670_01413) | - | 1428288..1428599 (+) | 312 | WP_103929441.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| CDIF28670_RS07120 (CDIF28670_01414) | infB | 1428621..1430561 (+) | 1941 | WP_003428235.1 | translation initiation factor IF-2 | - |
| CDIF28670_RS07125 (CDIF28670_01415) | rbfA | 1430604..1430984 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| CDIF28670_RS07130 (CDIF28670_01416) | - | 1430965..1431948 (+) | 984 | WP_003428233.1 | DHH family phosphoesterase | - |
| CDIF28670_RS07135 (CDIF28670_01417) | truB | 1431961..1432866 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| CDIF28670_RS07140 (CDIF28670_01418) | - | 1432997..1433926 (+) | 930 | WP_003428231.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| CDIF28670_RS07150 (CDIF28670_01419) | rpsO | 1434030..1434287 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| CDIF28670_RS07155 (CDIF28670_01420) | - | 1434527..1435372 (+) | 846 | WP_022616925.1 | DegV family protein | - |
| CDIF28670_RS07160 (CDIF28670_01421) | pnp | 1435497..1437608 (+) | 2112 | WP_022616926.1 | polyribonucleotide nucleotidyltransferase | - |
| CDIF28670_RS07165 (CDIF28670_01422) | - | 1437874..1438617 (+) | 744 | WP_003428228.1 | polysaccharide deacetylase family protein | - |
| CDIF28670_RS07170 (CDIF28670_01423) | - | 1438775..1440022 (+) | 1248 | WP_003428227.1 | M16 family metallopeptidase | - |
| CDIF28670_RS07175 (CDIF28670_01424) | - | 1440057..1440302 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| CDIF28670_RS07180 (CDIF28670_01425) | dapG | 1440312..1441535 (+) | 1224 | WP_003428226.1 | aspartate kinase | - |
| CDIF28670_RS07185 (CDIF28670_01426) | - | 1441648..1442382 (+) | 735 | WP_003428224.1 | ClpP family protease | - |
| CDIF28670_RS07190 (CDIF28670_01427) | - | 1442505..1444919 (+) | 2415 | WP_074097385.1 | FtsK/SpoIIIE family DNA translocase | - |
| CDIF28670_RS07195 (CDIF28670_01428) | mnmH | 1444922..1445980 (+) | 1059 | WP_003428222.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| CDIF28670_RS07200 (CDIF28670_01429) | rimO | 1445974..1447308 (+) | 1335 | WP_118712286.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| CDIF28670_RS07205 (CDIF28670_01430) | pgsA | 1447295..1447837 (+) | 543 | WP_021387802.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| CDIF28670_RS07210 (CDIF28670_01431) | recA | 1448125..1449171 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| CDIF28670_RS07215 (CDIF28670_01432) | rny | 1449347..1450888 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| CDIF28670_RS07220 (CDIF28670_01433) | - | 1451523..1453304 (+) | 1782 | WP_003428215.1 | UvrD-helicase domain-containing protein | - |
| CDIF28670_RS07225 (CDIF28670_01434) | lepB | 1453386..1453916 (-) | 531 | WP_021387803.1 | signal peptidase I | - |
| CDIF28670_RS07230 (CDIF28670_01435) | - | 1453956..1454780 (-) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| CDIF28670_RS07235 (CDIF28670_01436) | - | 1455037..1455945 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| CDIF28670_RS07240 (CDIF28670_01437) | purB | 1456089..1457534 (+) | 1446 | WP_022616928.1 | adenylosuccinate lyase | - |
| CDIF28670_RS07245 (CDIF28670_01438) | - | 1457844..1458296 (+) | 453 | WP_003428210.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CDIF28670_RS07250 (CDIF28670_01439) | - | 1458700..1460277 (+) | 1578 | WP_022616929.1 | PTS transporter subunit EIIC | - |
| CDIF28670_RS07255 (CDIF28670_01440) | - | 1460425..1461177 (+) | 753 | WP_022616930.1 | MurR/RpiR family transcriptional regulator | - |
| CDIF28670_RS07260 (CDIF28670_01441) | - | 1461310..1462677 (+) | 1368 | WP_022616931.1 | 6-phospho-alpha-glucosidase | - |
| CDIF28670_RS07265 (CDIF28670_01442) | - | 1462768..1463964 (-) | 1197 | WP_118712288.1 | pyridoxal phosphate-dependent aminotransferase | - |
| CDIF28670_RS07270 (CDIF28670_01443) | galT | 1464349..1465299 (+) | 951 | WP_003428205.1 | galactose-1-phosphate uridylyltransferase | - |
| CDIF28670_RS07275 (CDIF28670_01444) | - | 1465452..1466204 (+) | 753 | WP_003428204.1 | exodeoxyribonuclease III | - |
| CDIF28670_RS07280 (CDIF28670_01445) | - | 1466296..1467072 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| CDIF28670_RS07285 (CDIF28670_01446) | - | 1467387..1469285 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| CDIF28670_RS07290 (CDIF28670_01447) | - | 1469413..1470534 (-) | 1122 | WP_003428201.1 | MGDG synthase family glycosyltransferase | - |
| CDIF28670_RS07295 (CDIF28670_01448) | - | 1470733..1471065 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| CDIF28670_RS07300 (CDIF28670_01449) | - | 1471052..1472110 (+) | 1059 | WP_003428198.1 | DUF1700 domain-containing protein | - |
| CDIF28670_RS07305 (CDIF28670_01450) | - | 1472103..1473173 (+) | 1071 | WP_003428197.1 | DUF4097 family beta strand repeat-containing protein | - |
| CDIF28670_RS07310 (CDIF28670_01451) | - | 1473275..1473811 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| CDIF28670_RS07315 (CDIF28670_01452) | - | 1473927..1474634 (+) | 708 | WP_021393263.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| CDIF28670_RS07320 (CDIF28670_01453) | - | 1474636..1475352 (+) | 717 | WP_022616933.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| CDIF28670_RS07325 (CDIF28670_01454) | - | 1475354..1476112 (+) | 759 | WP_021427419.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| CDIF28670_RS07330 (CDIF28670_01455) | - | 1476247..1477635 (+) | 1389 | WP_021387809.1 | two-component system sensor histidine kinase | - |
| CDIF28670_RS07335 (CDIF28670_01456) | - | 1477711..1478532 (-) | 822 | WP_021381893.1 | pyridoxamine kinase | - |
| CDIF28670_RS07340 (CDIF28670_01457) | - | 1478783..1479937 (+) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| CDIF28670_RS07345 (CDIF28670_01458) | - | 1480120..1480320 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| CDIF28670_RS07350 (CDIF28670_01459) | - | 1480741..1481169 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| CDIF28670_RS07355 (CDIF28670_01460) | - | 1481312..1482067 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| CDIF28670_RS07365 (CDIF28670_01462) | - | 1482768..1483274 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIF28670_RS07370 (CDIF28670_01463) | - | 1483356..1483676 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| CDIF28670_RS07375 (CDIF28670_01464) | - | 1483845..1484042 (+) | 198 | WP_022616935.1 | helix-turn-helix transcriptional regulator | - |
| CDIF28670_RS07380 (CDIF28670_01465) | - | 1484147..1484587 (+) | 441 | WP_022616936.1 | hypothetical protein | - |
| CDIF28670_RS07385 (CDIF28670_01466) | - | 1484836..1485279 (+) | 444 | WP_003428180.1 | phage tail terminator family protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=153333 CDIF28670_RS07210 WP_003428218.1 1448125..1449171(+) (recA) [Clostridioides difficile strain DSM 28670]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=153333 CDIF28670_RS07210 WP_003428218.1 1448125..1449171(+) (recA) [Clostridioides difficile strain DSM 28670]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGACAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGACAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.