Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | CDIF28668_RS06835 | Genome accession | NZ_CP012309 |
| Coordinates | 1416525..1417571 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain DSM 28668 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1390468..1455335 | 1416525..1417571 | within | 0 |
Gene organization within MGE regions
Location: 1390468..1455335
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF28668_RS06710 (CDIF28668_01314) | rimP | 1392884..1393345 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| CDIF28668_RS06715 (CDIF28668_01315) | nusA | 1393375..1394529 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| CDIF28668_RS06720 (CDIF28668_01316) | rnpM | 1394536..1394817 (+) | 282 | WP_003419469.1 | RNase P modulator RnpM | - |
| CDIF28668_RS06725 (CDIF28668_01317) | - | 1394807..1395118 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| CDIF28668_RS06730 (CDIF28668_01318) | infB | 1395140..1397080 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| CDIF28668_RS06735 (CDIF28668_01319) | rbfA | 1397123..1397503 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| CDIF28668_RS06740 (CDIF28668_01320) | - | 1397484..1398161 (+) | 678 | Protein_1208 | DHH family phosphoesterase | - |
| CDIF28668_RS06750 (CDIF28668_01321) | tnpB | 1398810..1399928 (+) | 1119 | WP_032548186.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| CDIF28668_RS06755 (CDIF28668_01322) | - | 1400046..1400351 (+) | 306 | Protein_1210 | DHH family phosphoesterase | - |
| CDIF28668_RS06760 (CDIF28668_01323) | truB | 1400364..1401269 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| CDIF28668_RS06765 (CDIF28668_01324) | - | 1401400..1402329 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| CDIF28668_RS06775 (CDIF28668_01325) | rpsO | 1402433..1402690 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| CDIF28668_RS06780 (CDIF28668_01326) | - | 1402930..1403775 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| CDIF28668_RS06785 (CDIF28668_01327) | pnp | 1403900..1406011 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| CDIF28668_RS06790 (CDIF28668_01328) | - | 1406277..1407020 (+) | 744 | WP_107586822.1 | polysaccharide deacetylase family protein | - |
| CDIF28668_RS06795 (CDIF28668_01329) | - | 1407178..1408425 (+) | 1248 | WP_003438321.1 | M16 family metallopeptidase | - |
| CDIF28668_RS06800 (CDIF28668_01330) | - | 1408460..1408705 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| CDIF28668_RS06805 (CDIF28668_01331) | dapG | 1408715..1409938 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| CDIF28668_RS06810 (CDIF28668_01332) | - | 1410051..1410785 (+) | 735 | WP_003428224.1 | ClpP family protease | - |
| CDIF28668_RS06815 (CDIF28668_01333) | - | 1410908..1413319 (+) | 2412 | WP_003438328.1 | FtsK/SpoIIIE family DNA translocase | - |
| CDIF28668_RS06820 (CDIF28668_01334) | mnmH | 1413322..1414380 (+) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| CDIF28668_RS06825 (CDIF28668_01335) | rimO | 1414374..1415708 (+) | 1335 | WP_003433320.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| CDIF28668_RS06830 (CDIF28668_01336) | pgsA | 1415695..1416237 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| CDIF28668_RS06835 (CDIF28668_01337) | recA | 1416525..1417571 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| CDIF28668_RS06840 (CDIF28668_01338) | rny | 1417747..1419288 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| CDIF28668_RS06845 (CDIF28668_01339) | - | 1419923..1421704 (+) | 1782 | WP_021371984.1 | UvrD-helicase domain-containing protein | - |
| CDIF28668_RS06850 (CDIF28668_01340) | lepB | 1421786..1422316 (-) | 531 | WP_009902411.1 | signal peptidase I | - |
| CDIF28668_RS06855 (CDIF28668_01341) | - | 1422356..1423180 (-) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| CDIF28668_RS06860 (CDIF28668_01342) | - | 1423437..1424345 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| CDIF28668_RS06865 (CDIF28668_01343) | purB | 1424489..1425934 (+) | 1446 | WP_021363439.1 | adenylosuccinate lyase | - |
| CDIF28668_RS06870 (CDIF28668_01344) | - | 1426246..1426698 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CDIF28668_RS06875 (CDIF28668_01345) | - | 1427110..1428687 (+) | 1578 | WP_118822178.1 | PTS transporter subunit EIIC | - |
| CDIF28668_RS06880 (CDIF28668_01346) | - | 1428835..1429587 (+) | 753 | WP_009892977.1 | MurR/RpiR family transcriptional regulator | - |
| CDIF28668_RS06885 (CDIF28668_01347) | - | 1429720..1431066 (+) | 1347 | WP_009902417.1 | 6-phospho-alpha-glucosidase | - |
| CDIF28668_RS06890 (CDIF28668_01348) | - | 1431178..1432374 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| CDIF28668_RS06895 (CDIF28668_01349) | galT | 1432759..1433709 (+) | 951 | WP_003438360.1 | galactose-1-phosphate uridylyltransferase | - |
| CDIF28668_RS06900 (CDIF28668_01350) | - | 1433870..1434622 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| CDIF28668_RS06905 (CDIF28668_01351) | - | 1434714..1435490 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| CDIF28668_RS06910 (CDIF28668_01352) | - | 1435805..1437703 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| CDIF28668_RS06915 (CDIF28668_01353) | - | 1437831..1438952 (-) | 1122 | WP_003438374.1 | MGDG synthase family glycosyltransferase | - |
| CDIF28668_RS06920 (CDIF28668_01354) | - | 1439151..1439483 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| CDIF28668_RS06925 (CDIF28668_01355) | - | 1439470..1440552 (+) | 1083 | WP_074099250.1 | DUF1700 domain-containing protein | - |
| CDIF28668_RS06930 (CDIF28668_01356) | - | 1440545..1441615 (+) | 1071 | WP_118822179.1 | DUF4097 family beta strand repeat-containing protein | - |
| CDIF28668_RS06935 (CDIF28668_01357) | - | 1441717..1442253 (+) | 537 | WP_075052540.1 | hypothetical protein | - |
| CDIF28668_RS06940 (CDIF28668_01358) | - | 1442369..1443076 (+) | 708 | WP_021363440.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| CDIF28668_RS06945 (CDIF28668_01359) | - | 1443078..1443794 (+) | 717 | WP_016729591.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| CDIF28668_RS06950 (CDIF28668_01360) | - | 1443796..1444554 (+) | 759 | WP_118822180.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| CDIF28668_RS06955 (CDIF28668_01361) | - | 1444689..1446077 (+) | 1389 | WP_021363442.1 | two-component system sensor histidine kinase | - |
| CDIF28668_RS06960 (CDIF28668_01362) | - | 1446153..1446974 (-) | 822 | WP_118822181.1 | pyridoxamine kinase | - |
| CDIF28668_RS06965 (CDIF28668_01363) | - | 1447225..1448379 (+) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| CDIF28668_RS06970 (CDIF28668_01364) | - | 1448562..1448762 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| CDIF28668_RS06975 (CDIF28668_01365) | - | 1449183..1449611 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| CDIF28668_RS06980 (CDIF28668_01366) | - | 1449754..1450509 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| CDIF28668_RS06990 (CDIF28668_01368) | - | 1451210..1451716 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIF28668_RS06995 (CDIF28668_01369) | - | 1451798..1452118 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| CDIF28668_RS07000 (CDIF28668_01370) | - | 1452287..1452484 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| CDIF28668_RS07005 (CDIF28668_01371) | - | 1452588..1453028 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| CDIF28668_RS07010 (CDIF28668_01372) | - | 1453277..1453720 (+) | 444 | WP_021360485.1 | phage tail terminator family protein | - |
| CDIF28668_RS07015 (CDIF28668_01373) | - | 1453725..1454789 (+) | 1065 | WP_003438414.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| CDIF28668_RS07020 (CDIF28668_01374) | - | 1454803..1455231 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=153317 CDIF28668_RS06835 WP_003428218.1 1416525..1417571(+) (recA) [Clostridioides difficile strain DSM 28668]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=153317 CDIF28668_RS06835 WP_003428218.1 1416525..1417571(+) (recA) [Clostridioides difficile strain DSM 28668]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.