Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ADU73_RS02850 Genome accession   NZ_CP012294
Coordinates   594937..596061 (-) Length   374 a.a.
NCBI ID   WP_062913162.1    Uniprot ID   -
Organism   Pediococcus damnosus strain TMW 2.1536     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 589937..601061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ADU73_RS02840 (ADU73_0549) rny 591598..593157 (-) 1560 WP_046870906.1 ribonuclease Y -
  ADU73_RS02845 (ADU73_0550) - 593342..594709 (-) 1368 WP_046872291.1 ISLre2 family transposase -
  ADU73_RS02850 (ADU73_0551) recA 594937..596061 (-) 1125 WP_062913162.1 recombinase RecA Machinery gene
  ADU73_RS02855 (ADU73_0552) - 596151..597374 (-) 1224 WP_046870904.1 competence/damage-inducible protein A -
  ADU73_RS02860 (ADU73_0553) pgsA 597481..598065 (-) 585 WP_046870903.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ADU73_RS02865 (ADU73_0554) - 598080..598958 (-) 879 WP_046870902.1 helix-turn-helix domain-containing protein -
  ADU73_RS02870 (ADU73_0555) ymfI 599028..599753 (-) 726 WP_046870901.1 elongation factor P 5-aminopentanone reductase -
  ADU73_RS02875 (ADU73_0556) yfmH 599750..601054 (-) 1305 WP_062913163.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40720.12 Da        Isoelectric Point: 5.6296

>NTDB_id=153250 ADU73_RS02850 WP_062913162.1 594937..596061(-) (recA) [Pediococcus damnosus strain TMW 2.1536]
MADDQRKAALDAALKKIEKNFGKGSIMRMGDSAQTQISTISTGSLALDNALGVGGYPRGRIVEVYGPESSGKTTVALHAV
AQVQKEGGTAAYIDAENALDPVYAEHLGVNIDDLLLSQPDTGEEGLEITDALVSSGAVDLVVVDSVAALVPRAEIEGEMG
DAHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPEVTPGGRALKFYATIRLEIRRAEQIKDGTNIIGN
RVRIKVVKNKVAPPFKRAEVDIMYGHGISQTGEIIDMAVEKDIVDKSGSWYSYGDERIGQGRENAKQYLEDNPEKREEIY
KKVRAAYGMDETAEEKDEEEEQKKTKAKEKAKGKAKKEKSDPSKLDLEPSDKNK

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=153250 ADU73_RS02850 WP_062913162.1 594937..596061(-) (recA) [Pediococcus damnosus strain TMW 2.1536]
TTGGCTGATGATCAAAGAAAAGCAGCATTAGATGCTGCGCTTAAAAAAATCGAAAAGAATTTTGGTAAGGGGTCTATTAT
GCGAATGGGTGATTCTGCCCAAACGCAGATTTCTACCATTTCTACTGGCTCATTAGCATTGGATAATGCACTTGGTGTGG
GTGGCTACCCGCGTGGAAGAATCGTTGAAGTTTATGGACCAGAAAGTTCAGGAAAAACAACGGTTGCATTGCATGCAGTT
GCTCAAGTACAAAAGGAAGGCGGCACAGCAGCTTATATTGATGCAGAAAATGCGTTAGATCCTGTTTATGCAGAGCATTT
AGGCGTTAATATTGATGACTTGCTGTTATCTCAACCGGACACAGGTGAAGAAGGTCTTGAAATCACCGATGCATTAGTAT
CTAGTGGTGCTGTTGATTTGGTTGTTGTTGATTCAGTTGCGGCATTGGTTCCTCGTGCAGAAATTGAGGGTGAAATGGGT
GATGCTCATGTTGGCCTTCAAGCTCGTCTCATGTCACAGGCTCTTCGTAAGCTTTCTGGTTCTATCAATAAAACGAAGAC
GATTGCCATTTTTATTAATCAAATTCGTGAAAAAGTTGGGGTTATGTTTGGTAATCCTGAGGTCACACCTGGTGGACGGG
CTTTGAAATTCTATGCAACAATTCGATTAGAGATTCGTCGTGCAGAACAAATTAAAGATGGTACGAATATTATTGGAAAT
CGAGTTCGAATCAAGGTTGTTAAAAACAAGGTTGCGCCTCCATTTAAACGTGCCGAGGTCGATATCATGTACGGGCATGG
AATTTCCCAAACCGGAGAAATTATTGATATGGCTGTTGAGAAAGATATCGTTGATAAAAGTGGTTCTTGGTATTCATATG
GTGATGAACGAATTGGACAGGGCCGTGAAAATGCTAAGCAATATTTAGAAGATAACCCTGAAAAAAGAGAAGAAATTTAC
AAAAAAGTTCGTGCAGCCTATGGGATGGATGAAACAGCTGAAGAAAAAGATGAGGAAGAAGAACAGAAAAAAACTAAGGC
TAAGGAAAAGGCAAAAGGAAAAGCAAAGAAAGAAAAGTCTGATCCTTCTAAGCTAGATCTTGAACCTTCTGATAAAAATA
AATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

83.284

89.572

0.746
  recA Bacillus subtilis subsp. subtilis str. 168

74.242

88.235

0.655
  recA Streptococcus mitis NCTC 12261

68.497

92.513

0.634
  recA Streptococcus mitis SK321

68.497

92.513

0.634
  recA Streptococcus mutans UA159

67.236

93.85

0.631
  recA Streptococcus pneumoniae R6

67.335

93.316

0.628
  recA Streptococcus pneumoniae Rx1

67.335

93.316

0.628
  recA Streptococcus pneumoniae D39

67.335

93.316

0.628
  recA Streptococcus pneumoniae TIGR4

67.335

93.316

0.628
  recA Streptococcus pyogenes NZ131

69.697

88.235

0.615
  recA Lactococcus lactis subsp. cremoris KW2

67.066

89.305

0.599
  recA Neisseria gonorrhoeae MS11

61.605

93.316

0.575
  recA Neisseria gonorrhoeae strain FA1090

61.605

93.316

0.575
  recA Neisseria gonorrhoeae MS11

61.605

93.316

0.575
  recA Pseudomonas stutzeri DSM 10701

63.777

86.364

0.551
  recA Acinetobacter baylyi ADP1

59.942

91.444

0.548
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.942

91.444

0.548
  recA Ralstonia pseudosolanacearum GMI1000

65.495

83.69

0.548
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.043

86.096

0.543
  recA Vibrio cholerae strain A1552

63.043

86.096

0.543
  recA Acinetobacter baumannii D1279779

59.238

91.176

0.54
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.28

87.701

0.537
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.3

86.364

0.529
  recA Glaesserella parasuis strain SC1401

61.371

85.829

0.527
  recA Helicobacter pylori 26695

58.788

88.235

0.519
  recA Helicobacter pylori strain NCTC11637

58.788

88.235

0.519

Multiple sequence alignment