Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AFK65_RS15265 Genome accession   NZ_CP012257
Coordinates   3316298..3317362 (-) Length   354 a.a.
NCBI ID   WP_007701154.1    Uniprot ID   A0AAC8ZS18
Organism   Cronobacter universalis NCTC 9529     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3311298..3322362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AFK65_RS15250 (AFK65_15290) csrA 3312541..3312726 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  AFK65_RS15255 (AFK65_15295) alaS 3312970..3315597 (-) 2628 WP_032804888.1 alanine--tRNA ligase -
  AFK65_RS15260 (AFK65_15300) recX 3315732..3316229 (-) 498 WP_032804890.1 recombination regulator RecX -
  AFK65_RS15265 (AFK65_15305) recA 3316298..3317362 (-) 1065 WP_007701154.1 recombinase RecA Machinery gene
  AFK65_RS15270 (AFK65_15310) pncC 3317451..3317948 (-) 498 WP_038856448.1 nicotinamide-nucleotide amidase -
  AFK65_RS15275 (AFK65_15315) mltB 3318088..3319170 (-) 1083 WP_038856446.1 lytic murein transglycosylase B -
  AFK65_RS15280 (AFK65_15320) - 3319285..3320007 (-) 723 WP_038856445.1 amino acid ABC transporter ATP-binding protein -
  AFK65_RS15285 (AFK65_15325) - 3319994..3320758 (-) 765 WP_004387893.1 amino acid ABC transporter permease -
  AFK65_RS15290 (AFK65_15330) - 3320832..3321599 (-) 768 WP_032804891.1 basic amino acid ABC transporter substrate-binding protein -
  AFK65_RS15295 (AFK65_15335) - 3321772..3321984 (+) 213 WP_007701184.1 KTSC domain-containing protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38161.55 Da        Isoelectric Point: 4.7562

>NTDB_id=153068 AFK65_RS15265 WP_007701154.1 3316298..3317362(-) (recA) [Cronobacter universalis NCTC 9529]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRTMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQRAGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVLVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGEEVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINFYGELVDLGVKHKLIEKAGAWYSYNGEKIGQGKANATNFLKENKPMADEI
EKKLREMLLNNQDATPDFTVDDNDGGVEETNEEF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=153068 AFK65_RS15265 WP_007701154.1 3316298..3317362(-) (recA) [Cronobacter universalis NCTC 9529]
ATGGCTATCGACGAAAACAAGCAGAAGGCGTTGGCGGCAGCACTCGGCCAGATTGAGAAGCAATTCGGCAAAGGCTCCAT
CATGCGTTTGGGTGAAGATCGCACCATGGATGTGGAAACGATCTCCACCGGCTCTCTCTCCCTGGATATCGCGCTGGGAG
CGGGCGGTCTGCCGATGGGGCGTATCGTGGAAATTTACGGCCCGGAATCTTCAGGTAAAACCACGCTGACGCTGCAGGTT
ATCGCCGCGGCACAGCGCGCCGGTAAAACCTGTGCGTTTATCGACGCAGAGCACGCGCTCGATCCCGTCTATGCCCGTAA
GCTCGGCGTAGATATCGATAACCTGCTCTGCTCTCAGCCGGACACCGGCGAGCAGGCGCTGGAAATCTGTGACGCGCTGG
CGCGCTCCGGCGCGGTTGACGTGCTGGTTGTCGACTCCGTTGCGGCCCTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCCGGTAACCTGAAAAACTCTAA
CACCCTGCTTATCTTCATCAACCAGATCCGTATGAAGATTGGCGTGATGTTTGGTAACCCGGAAACCACGACCGGCGGTA
ACGCGCTGAAATTCTACGCTTCTGTCCGTCTCGACATCCGCCGTATCGGCGCGGTGAAAGAGGGCGAGGAAGTGGTAGGT
AGCGAAACCCGCGTGAAAGTGGTGAAAAACAAAGTCGCTGCGCCGTTCAAACAGGCTGAATTCCAGATCCTCTACGGTGA
AGGCATCAACTTCTACGGCGAGCTGGTTGACCTTGGCGTGAAGCACAAGCTGATTGAGAAAGCAGGCGCCTGGTACAGCT
ACAACGGCGAGAAGATCGGTCAGGGTAAAGCGAACGCGACCAACTTCCTCAAAGAGAACAAGCCAATGGCTGACGAAATT
GAGAAGAAGCTGCGCGAAATGCTGCTCAACAACCAGGACGCTACGCCTGACTTCACCGTCGATGATAACGACGGCGGCGT
TGAAGAAACCAACGAAGAGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

84.29

93.503

0.788
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.29

93.503

0.788
  recA Pseudomonas stutzeri DSM 10701

74.481

95.198

0.709
  recA Acinetobacter baylyi ADP1

71.884

97.458

0.701
  recA Acinetobacter baumannii D1279779

74.618

92.373

0.689
  recA Glaesserella parasuis strain SC1401

69.231

99.153

0.686
  recA Neisseria gonorrhoeae MS11

69.632

92.09

0.641
  recA Neisseria gonorrhoeae MS11

69.632

92.09

0.641
  recA Neisseria gonorrhoeae strain FA1090

69.632

92.09

0.641
  recA Ralstonia pseudosolanacearum GMI1000

71.383

87.853

0.627
  recA Helicobacter pylori strain NCTC11637

62.315

95.198

0.593
  recA Helicobacter pylori 26695

62.018

95.198

0.59
  recA Streptococcus mitis SK321

58.64

99.718

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

63.863

90.678

0.579
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.963

91.525

0.576
  recA Streptococcus pneumoniae D39

62.848

91.243

0.573
  recA Streptococcus pneumoniae TIGR4

62.848

91.243

0.573
  recA Streptococcus pneumoniae Rx1

62.848

91.243

0.573
  recA Streptococcus pneumoniae R6

62.848

91.243

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

62.154

91.808

0.571
  recA Streptococcus mutans UA159

62.154

91.808

0.571
  recA Streptococcus mitis NCTC 12261

62.229

91.243

0.568
  recA Lactococcus lactis subsp. cremoris KW2

62.229

91.243

0.568
  recA Streptococcus pyogenes NZ131

61.846

91.808

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.241

93.785

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

90.678

0.556

Multiple sequence alignment