Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AEI26_RS08395 Genome accession   NZ_CP012212
Coordinates   1596164..1597195 (-) Length   343 a.a.
NCBI ID   WP_002862302.1    Uniprot ID   A0AA44HHA8
Organism   Campylobacter jejuni strain CJ017CCUA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1591164..1602195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI26_RS08340 (AEI26_08265) - 1591329..1591766 (-) 438 WP_044778617.1 DUF411 domain-containing protein -
  AEI26_RS09235 (AEI26_08270) - 1591875..1592009 (-) 135 WP_284675434.1 hypothetical protein -
  AEI26_RS08345 (AEI26_08275) - 1592078..1592494 (-) 417 WP_070298614.1 hypothetical protein -
  AEI26_RS08375 (AEI26_08305) - 1593151..1593999 (-) 849 WP_070298621.1 DNA ligase -
  AEI26_RS08380 (AEI26_08310) cgpA 1593999..1594661 (-) 663 WP_070298615.1 glycoprotein CgpA -
  AEI26_RS08385 (AEI26_08315) - 1594651..1594854 (-) 204 WP_002839177.1 hypothetical protein -
  AEI26_RS08390 (AEI26_08320) eno 1594920..1596164 (-) 1245 WP_002856489.1 phosphopyruvate hydratase -
  AEI26_RS08395 (AEI26_08325) recA 1596164..1597195 (-) 1032 WP_002862302.1 recombinase RecA Machinery gene
  AEI26_RS08400 (AEI26_08330) - 1597301..1598161 (+) 861 WP_070298616.1 menaquinone biosynthesis family protein -
  AEI26_RS08405 (AEI26_08335) fliQ 1598173..1598442 (+) 270 WP_002851290.1 flagellar biosynthesis protein FliQ -
  AEI26_RS08410 (AEI26_08340) murB 1598439..1599215 (+) 777 WP_070298617.1 UDP-N-acetylmuramate dehydrogenase -
  AEI26_RS08415 (AEI26_08345) - 1599239..1600009 (-) 771 WP_079396960.1 hypothetical protein -
  AEI26_RS08420 (AEI26_08350) cysQ 1600049..1600813 (-) 765 WP_053872181.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  AEI26_RS08425 (AEI26_08355) gltA 1600893..1602161 (-) 1269 WP_002922091.1 citrate synthase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37083.29 Da        Isoelectric Point: 4.9784

>NTDB_id=152337 AEI26_RS08395 WP_002862302.1 1596164..1597195(-) (recA) [Campylobacter jejuni strain CJ017CCUA]
MDDNKRKSLDAALKSLDKTFGKGTILRLGDKEVEQIDSIGTGSVGLDLALGIGGVPKGRIIEIYGPESSGKTTLTLHIIA
ECQKAGGVCAFIDAEHALDVKYAKNLGVNTDDLYVSQPDFGEQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGD
QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEEPIGN
RVKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEIT
KAIQNSMGIEGMFSGSEDDEGEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=152337 AEI26_RS08395 WP_002862302.1 1596164..1597195(-) (recA) [Campylobacter jejuni strain CJ017CCUA]
ATGGATGATAATAAAAGAAAATCCCTAGACGCTGCCCTAAAAAGTTTAGATAAAACCTTTGGAAAAGGCACTATCTTAAG
ACTAGGGGATAAAGAAGTTGAGCAAATCGATAGCATAGGCACAGGTTCAGTTGGGCTTGATCTTGCTTTAGGTATAGGCG
GTGTTCCAAAAGGAAGAATTATAGAAATTTATGGGCCTGAAAGTTCAGGTAAAACCACTCTAACTTTACACATTATCGCA
GAATGCCAAAAAGCAGGTGGAGTTTGTGCTTTTATCGATGCAGAACATGCGCTTGATGTAAAATATGCTAAAAATTTAGG
TGTAAATACAGATGATTTGTATGTTTCTCAGCCTGATTTTGGAGAGCAAGCCTTAGAAATTGTAGAAACTATAGCAAGAA
GTGGTGCAGTAGATCTTATCGTAGTAGATAGCGTTGCAGCACTTACCCCAAAAGCAGAAATTGAAGGCGATATGGGTGAT
CAACATGTAGGACTTCAAGCAAGACTTATGTCTCAAGCTCTAAGAAAACTTACAGGTATAGTTCATAAAATGAATACCAC
AGTAATTTTCATCAACCAAATTCGTATGAAAATCGGTGCTATGGGTTATGGTACTCCTGAAACCACAACAGGTGGAAATG
CGTTAAAATTTTATGCTTCTGTGCGTTTAGATGTTAGAAAAGTAGCAACCTTAAAACAAAACGAAGAACCTATAGGAAAC
CGCGTTAAAGTAAAAGTAGTTAAAAATAAAGTTGCTCCTCCATTCAGACAAGCTGAATTTGATGTGATGTTTGGAGAGGG
TTTAAGCCGTGAAGGTGAGTTGATTGATTACGGTGTAAAACTTGATATTGTAGATAAAAGTGGTGCGTGGTTCTCTTATA
AAGATAAAAAACTTGGACAAGGTAGAGAAAACTCAAAAGCTTTTTTAAAAGAAAACCCTGAAATTGCAGATGAAATCACA
AAAGCGATTCAAAATTCTATGGGAATAGAAGGTATGTTCAGCGGTAGCGAAGATGACGAAGGAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.708

100

0.997
  recA Helicobacter pylori 26695

79.268

95.627

0.758
  recA Helicobacter pylori strain NCTC11637

78.963

95.627

0.755
  recA Neisseria gonorrhoeae MS11

64.809

99.417

0.644
  recA Neisseria gonorrhoeae MS11

64.809

99.417

0.644
  recA Neisseria gonorrhoeae strain FA1090

64.809

99.417

0.644
  recA Acinetobacter baylyi ADP1

62.974

100

0.63
  recA Acinetobacter baumannii D1279779

61.808

100

0.618
  recA Glaesserella parasuis strain SC1401

65.031

95.044

0.618
  recA Pseudomonas stutzeri DSM 10701

64.832

95.335

0.618
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.855

96.793

0.618
  recA Ralstonia pseudosolanacearum GMI1000

63.72

95.627

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.506

94.461

0.609
  recA Vibrio cholerae strain A1552

64.506

94.461

0.609
  recA Bacillus subtilis subsp. subtilis str. 168

63.914

95.335

0.609
  recA Streptococcus pneumoniae Rx1

59.574

95.918

0.571
  recA Streptococcus pneumoniae D39

59.574

95.918

0.571
  recA Streptococcus pneumoniae R6

59.574

95.918

0.571
  recA Streptococcus pneumoniae TIGR4

59.574

95.918

0.571
  recA Streptococcus mitis NCTC 12261

58.967

95.918

0.566
  recA Streptococcus pyogenes NZ131

58.788

96.21

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

59.021

95.335

0.563
  recA Streptococcus mitis SK321

58.359

95.918

0.56
  recA Streptococcus mutans UA159

57.704

96.501

0.557
  recA Lactococcus lactis subsp. cremoris KW2

57.447

95.918

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.177

92.128

0.545

Multiple sequence alignment