Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SGRAN_RS14770 Genome accession   NZ_CP012199
Coordinates   3234511..3235590 (-) Length   359 a.a.
NCBI ID   WP_067184871.1    Uniprot ID   A0AA86GSJ2
Organism   Sphingopyxis granuli strain TFA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3229511..3240590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGRAN_RS14745 - 3229836..3230213 (+) 378 WP_172709660.1 zinc ribbon domain-containing protein -
  SGRAN_RS14750 (SGRAN_2936) - 3230213..3231364 (+) 1152 WP_067184861.1 thiolase family protein -
  SGRAN_RS14755 (SGRAN_2937) - 3231411..3232154 (+) 744 WP_067184864.1 Asp/Glu racemase -
  SGRAN_RS14760 (SGRAN_2938) - 3232211..3233401 (+) 1191 WP_067184865.1 S9 family peptidase -
  SGRAN_RS14765 (SGRAN_2939) - 3233571..3234263 (+) 693 WP_082737289.1 TetR/AcrR family transcriptional regulator -
  SGRAN_RS14770 (SGRAN_2940) recA 3234511..3235590 (-) 1080 WP_067184871.1 recombinase RecA Machinery gene
  SGRAN_RS14775 (SGRAN_2941) - 3235707..3236057 (-) 351 WP_237233527.1 response regulator -
  SGRAN_RS14780 (SGRAN_2942) - 3236050..3238458 (-) 2409 WP_067187104.1 response regulator -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38494.99 Da        Isoelectric Point: 4.9551

>NTDB_id=152154 SGRAN_RS14770 WP_067184871.1 3234511..3235590(-) (recA) [Sphingopyxis granuli strain TFA]
MAGQLSLVESGKSVNGPDRQKALDAALAQIDRAFGKGSVMKLGSKEAMQVEAISTGSLGLDIALGVGGLPRGRVIEIYGP
ESSGKTTLALHCIAEAQKMGGTAAFVDAEHALDPVYAKKLGVDIDELIVSQPDTGEQALEIVDTLVRSNAIDVLVVDSVA
ALVPRAEIEGEMGDSHVGLQARLMSQSLRKLTGSISRSRCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRR
TGQIKDRDDIVGNTTRVKVVKNKVAPPFKQVEFDIMYGQGISKIGEILDLGVKAGLVEKSGAWFSYDSIRIGQGRENAKN
FLSENPELMQRLESAIRGRTDAVAEEMMTGPDDGEDDDL

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=152154 SGRAN_RS14770 WP_067184871.1 3234511..3235590(-) (recA) [Sphingopyxis granuli strain TFA]
ATGGCCGGACAATTGTCACTCGTCGAATCGGGGAAATCAGTGAACGGACCAGACAGGCAGAAGGCGCTCGACGCCGCATT
GGCGCAGATCGACCGCGCCTTCGGCAAGGGCTCAGTGATGAAGCTCGGCTCGAAGGAGGCGATGCAGGTCGAGGCGATCT
CGACCGGTTCGCTCGGGCTCGACATTGCGCTGGGGGTCGGTGGCCTGCCGCGCGGGCGCGTCATCGAAATCTATGGCCCC
GAAAGTTCGGGCAAGACTACGCTCGCGCTGCATTGCATTGCTGAGGCGCAGAAGATGGGCGGCACCGCGGCCTTTGTCGA
CGCCGAACATGCGCTCGATCCCGTCTATGCGAAGAAGCTTGGCGTCGACATCGACGAACTGATCGTGTCGCAGCCCGACA
CCGGCGAGCAGGCGCTCGAGATCGTCGACACGCTGGTGCGTTCGAACGCGATCGACGTGCTCGTCGTCGATTCGGTCGCG
GCGCTCGTTCCGCGTGCCGAGATCGAGGGCGAGATGGGCGACAGTCATGTCGGCCTGCAGGCACGGCTGATGTCGCAGAG
CCTGCGCAAGCTCACCGGGTCGATCAGCCGTTCGCGCTGCATGGTGATCTTCATCAACCAGCTGCGCATGAAGATCGGCG
TGATGTACGGGAATCCCGAGACAACGACCGGCGGCAACGCGCTCAAATTCTATGCCTCGGTCCGCCTCGACATTCGCCGC
ACCGGGCAGATCAAGGACCGCGACGATATCGTCGGCAACACGACGCGCGTCAAGGTGGTCAAGAACAAGGTTGCGCCGCC
GTTCAAGCAGGTCGAGTTCGACATCATGTACGGTCAGGGTATTTCGAAGATCGGCGAGATCCTTGACCTCGGCGTTAAGG
CCGGGCTGGTCGAGAAATCGGGCGCCTGGTTCAGCTATGATTCGATCCGAATCGGGCAGGGCCGCGAGAATGCGAAGAAT
TTCCTGAGCGAAAATCCCGAGCTGATGCAGCGGCTCGAAAGCGCGATCCGCGGCCGCACCGATGCGGTGGCGGAAGAGAT
GATGACCGGTCCCGACGACGGGGAAGACGACGATCTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

67.857

93.593

0.635
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.857

93.593

0.635
  recA Pseudomonas stutzeri DSM 10701

70.497

89.694

0.632
  recA Glaesserella parasuis strain SC1401

68.405

90.808

0.621
  recA Acinetobacter baumannii D1279779

64.62

95.265

0.616
  recA Neisseria gonorrhoeae strain FA1090

68.847

89.415

0.616
  recA Neisseria gonorrhoeae MS11

68.847

89.415

0.616
  recA Neisseria gonorrhoeae MS11

68.847

89.415

0.616
  recA Acinetobacter baylyi ADP1

64.412

94.708

0.61
  recA Ralstonia pseudosolanacearum GMI1000

70.455

85.794

0.604
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.257

92.201

0.602
  recA Bacillus subtilis subsp. subtilis str. 168

67.5

89.136

0.602
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.865

95.265

0.599
  recA Helicobacter pylori strain NCTC11637

62.908

93.872

0.591
  recA Latilactobacillus sakei subsp. sakei 23K

62.242

94.429

0.588
  recA Helicobacter pylori 26695

62.611

93.872

0.588
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.355

94.15

0.568
  recA Streptococcus pyogenes NZ131

59.824

94.986

0.568
  recA Streptococcus mitis NCTC 12261

61.656

90.808

0.56
  recA Streptococcus mitis SK321

61.656

90.808

0.56
  recA Streptococcus pneumoniae D39

60.976

91.365

0.557
  recA Streptococcus pneumoniae TIGR4

60.976

91.365

0.557
  recA Streptococcus pneumoniae R6

60.976

91.365

0.557
  recA Streptococcus pneumoniae Rx1

60.976

91.365

0.557
  recA Streptococcus mutans UA159

58.651

94.986

0.557
  recA Lactococcus lactis subsp. cremoris KW2

59.202

90.808

0.538

Multiple sequence alignment