Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AKG30_RS04055 Genome accession   NZ_CP012187
Coordinates   820175..821236 (+) Length   353 a.a.
NCBI ID   WP_050893703.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain CAUH35     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 815175..826236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AKG30_RS04035 (AKG30_04040) ymfI 816118..816846 (+) 729 WP_003601719.1 elongation factor P 5-aminopentanone reductase -
  AKG30_RS04040 (AKG30_04045) - 816933..817871 (+) 939 WP_003601721.1 helix-turn-helix domain-containing protein -
  AKG30_RS04045 (AKG30_04050) pgsA 817868..818461 (+) 594 WP_003564171.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AKG30_RS04050 (AKG30_04055) cinA 818877..820118 (+) 1242 WP_003601723.1 competence/damage-inducible protein A Machinery gene
  AKG30_RS04055 (AKG30_04060) recA 820175..821236 (+) 1062 WP_050893703.1 recombinase RecA Machinery gene
  AKG30_RS16630 (AKG30_04065) - 821473..821823 (+) 351 WP_016379056.1 transposase family protein -
  AKG30_RS15080 - 821810..822742 (+) 933 WP_225354486.1 ISL3 family transposase -
  AKG30_RS04070 (AKG30_04075) rny 823025..824596 (+) 1572 WP_003657913.1 ribonuclease Y -
  AKG30_RS04075 (AKG30_04080) - 824690..825340 (-) 651 WP_003601729.1 YigZ family protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37847.05 Da        Isoelectric Point: 6.1717

>NTDB_id=152098 AKG30_RS04055 WP_050893703.1 820175..821236(+) (recA) [Lacticaseibacillus paracasei strain CAUH35]
MAGDERQKALDVALKKIEKNFGKGAIMRMGAKADTRVSVVSSGSLAVDDALGVGGFPRGRIVEIYGPESSGKTTVALHAV
AEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMG
DAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIFGSPETRPGGRALKFYATVRLEIRRSEQIKTGADVVGN
RTKIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKSGSWYTYQGERIGQGRENAKTYLDNHADLQQTIK
QQVRVAYGMAAAPGRETASVSEDQPEIHQQAEV

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=152098 AKG30_RS04055 WP_050893703.1 820175..821236(+) (recA) [Lacticaseibacillus paracasei strain CAUH35]
ATGGCAGGAGACGAACGCCAGAAAGCATTGGATGTTGCACTGAAAAAGATTGAAAAAAATTTTGGTAAAGGCGCGATTAT
GCGAATGGGTGCTAAGGCAGACACGCGCGTTTCCGTTGTCTCTAGCGGCTCACTTGCCGTTGATGATGCACTTGGTGTTG
GGGGCTTTCCGCGCGGACGAATTGTCGAAATTTATGGACCGGAAAGTTCCGGCAAAACAACCGTCGCGCTGCATGCTGTT
GCTGAAGTGCAGAAGCAAGGCGGTACTGCCGCCTATATTGATGCCGAGAATGCGATGGATCCCAAGTACGCAACTGCTTT
GGGCGTCAATATTGACGAATTATTGCTCTCCCAGCCAGACACAGGCGAACAAGGGCTGGAGATTGCTGATGAACTAGTCG
CGTCTGGTGCCATTGATATTGTGGTGATTGATTCAGTTGCTGCTTTGGTGCCGCGGGCTGAGATTGAGGGCGATATGGGG
GATGCCCATGTTGGCTTGCAAGCCCGATTAATGTCACAGGCGTTACGTAAGTTATCCGGTTCCATCAATAAGACAAAAAC
GATTGCTTTATTCATTAATCAGATTCGTGAGAAAGTCGGGATCATTTTTGGGAGTCCGGAAACGAGACCAGGTGGTCGTG
CCTTGAAGTTTTATGCGACTGTTCGGTTAGAGATCCGGCGGTCGGAACAGATCAAGACAGGCGCAGATGTCGTCGGCAAT
CGCACTAAAATCAAAGTGGTCAAGAATAAGGTGGCACCGCCTTTTCGAACAGCAATTGTGGATATCATGTATGGCCAAGG
CATTTCGCAAACTGGCGAACTTGTCGACATGGCCGTTGAGAGAGATATTGTTGAAAAATCAGGTTCATGGTACACGTATC
AAGGTGAACGCATCGGCCAAGGTCGCGAAAACGCTAAGACATATCTTGATAACCACGCTGATCTTCAGCAGACGATTAAA
CAACAGGTTCGCGTGGCTTATGGTATGGCAGCCGCACCTGGTCGGGAGACGGCTTCGGTCAGTGAAGATCAACCCGAAAT
ACATCAACAGGCTGAAGTATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

78.963

98.3

0.776
  recA Bacillus subtilis subsp. subtilis str. 168

74.154

92.068

0.683
  recA Streptococcus mutans UA159

67.341

98.017

0.66
  recA Streptococcus mitis SK321

67.341

98.017

0.66
  recA Streptococcus mitis NCTC 12261

67.341

98.017

0.66
  recA Streptococcus pyogenes NZ131

70

93.484

0.654
  recA Streptococcus pneumoniae Rx1

68.882

93.768

0.646
  recA Streptococcus pneumoniae D39

68.882

93.768

0.646
  recA Streptococcus pneumoniae R6

68.882

93.768

0.646
  recA Streptococcus pneumoniae TIGR4

68.882

93.768

0.646
  recA Lactococcus lactis subsp. cremoris KW2

68.58

93.768

0.643
  recA Ralstonia pseudosolanacearum GMI1000

65.495

88.669

0.581
  recA Neisseria gonorrhoeae MS11

62.385

92.635

0.578
  recA Neisseria gonorrhoeae MS11

62.385

92.635

0.578
  recA Neisseria gonorrhoeae strain FA1090

62.385

92.635

0.578
  recA Acinetobacter baylyi ADP1

57.849

97.45

0.564
  recA Pseudomonas stutzeri DSM 10701

58.235

96.317

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

91.501

0.555
  recA Acinetobacter baumannii D1279779

60.436

90.935

0.55
  recA Glaesserella parasuis strain SC1401

54.83

99.717

0.547
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.021

92.635

0.547
  recA Helicobacter pylori strain NCTC11637

58.182

93.484

0.544
  recA Helicobacter pylori 26695

58.182

93.484

0.544
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.19

90.935

0.538
  recA Vibrio cholerae strain A1552

59.19

90.935

0.538
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.269

92.635

0.521

Multiple sequence alignment