Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DB34_RS04205 Genome accession   NZ_CP012111
Coordinates   899293..900318 (+) Length   341 a.a.
NCBI ID   WP_280114343.1    Uniprot ID   -
Organism   Acetobacter pasteurianus strain Ab3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 894293..905318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DB34_RS04185 (DB34_04205) - 894757..895233 (+) 477 WP_050818969.1 hypothetical protein -
  DB34_RS04190 (DB34_04210) hemA 895294..896601 (+) 1308 WP_050818970.1 5-aminolevulinate synthase -
  DB34_RS04195 (DB34_04215) - 896653..897531 (-) 879 WP_050818971.1 DsbA family protein -
  DB34_RS04200 (DB34_04220) - 897579..899033 (+) 1455 WP_050818972.1 gamma-glutamyltransferase -
  DB34_RS04205 (DB34_04225) recA 899293..900318 (+) 1026 WP_280114343.1 recombinase RecA Machinery gene
  DB34_RS04210 (DB34_04230) - 900327..900839 (-) 513 WP_050818974.1 GNAT family N-acetyltransferase -
  DB34_RS04215 (DB34_04235) - 900909..901274 (+) 366 WP_050818975.1 winged helix-turn-helix domain-containing protein -
  DB34_RS04220 (DB34_04240) - 901341..902885 (+) 1545 WP_050818976.1 glucan biosynthesis protein -
  DB34_RS04225 (DB34_04245) mdoH 902888..905020 (+) 2133 WP_196332602.1 glucans biosynthesis glucosyltransferase MdoH -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36661.02 Da        Isoelectric Point: 6.7070

>NTDB_id=151429 DB34_RS04205 WP_280114343.1 899293..900318(+) (recA) [Acetobacter pasteurianus strain Ab3]
MDKAKALEGALGQIERAFGKGSVMRLGQRPKVEADVIPTGSLGLDIALGIGGLPRGRVVEIYGPESSGKTTLALHAIAEA
QKRGGTCAFIDAEHALDPGYAKKLGVDVDNLLISQPDAGEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGDMGDSH
VGLHARLMSQALRKLTGTVARSNTLMIFLNQIRLKIGVMFGNPETTTGGNALKFYSSVRMDIRRIGSIKDKDEVTGNQTR
VKVVKNKMAPPFRQVEFDIMYGEGISKVGELIDLGVKAGVVEKSGAWFSYDSQRIGQGRENAKQFLRDHPEMAADIERRV
REHAGVVAEAMMVAPEHHEGD

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=151429 DB34_RS04205 WP_280114343.1 899293..900318(+) (recA) [Acetobacter pasteurianus strain Ab3]
ATGGATAAGGCAAAGGCTCTCGAAGGCGCGCTAGGACAGATTGAACGTGCTTTTGGCAAAGGTTCTGTCATGCGTTTGGG
GCAGCGGCCCAAAGTAGAGGCAGATGTTATTCCTACGGGTTCCCTTGGGTTGGATATTGCGCTCGGAATTGGTGGGTTGC
CCCGGGGGCGCGTAGTAGAAATTTACGGGCCAGAAAGCTCTGGTAAAACCACGCTTGCACTGCATGCCATTGCAGAAGCG
CAAAAACGTGGCGGAACATGTGCCTTTATTGATGCCGAGCATGCATTAGACCCCGGTTATGCAAAAAAACTGGGCGTGGA
CGTAGATAACCTGCTGATCAGCCAGCCAGATGCCGGTGAACAGGCGCTGGAAATTGCAGATACACTTGTAAGATCCGGCG
CTATTGATGTTCTGGTTGTGGATAGTGTTGCCGCATTGGTGCCGCGTGCAGAACTGGAAGGGGATATGGGCGATAGCCAT
GTTGGCCTTCATGCACGTTTGATGAGCCAGGCGCTGCGTAAGCTTACGGGCACGGTGGCGCGTTCCAATACCCTGATGAT
CTTCCTGAACCAGATTCGCCTAAAAATTGGGGTGATGTTTGGGAACCCGGAAACAACCACGGGTGGTAACGCCCTGAAGT
TCTATTCCTCTGTGCGTATGGATATTCGCCGCATCGGGTCAATCAAGGACAAGGATGAGGTTACGGGTAACCAGACGCGC
GTAAAGGTTGTCAAAAACAAAATGGCGCCGCCTTTCCGTCAGGTGGAATTCGATATCATGTACGGTGAAGGTATCAGCAA
GGTGGGTGAACTGATCGACCTTGGTGTAAAAGCCGGTGTTGTTGAAAAATCTGGGGCTTGGTTCTCATACGATAGTCAGC
GCATTGGGCAGGGGCGTGAAAACGCCAAGCAGTTCCTGCGTGATCATCCAGAAATGGCCGCTGATATTGAACGCCGTGTG
CGTGAACATGCCGGTGTTGTTGCCGAGGCCATGATGGTGGCGCCAGAACACCATGAAGGCGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(5-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

69.817

96.188

0.672
  recA Neisseria gonorrhoeae MS11

68.712

95.601

0.657
  recA Neisseria gonorrhoeae MS11

68.712

95.601

0.657
  recA Neisseria gonorrhoeae strain FA1090

68.712

95.601

0.657
  recA Pseudomonas stutzeri DSM 10701

66.467

97.947

0.651
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.793

99.12

0.642
  recA Vibrio cholerae strain A1552

64.793

99.12

0.642
  recA Glaesserella parasuis strain SC1401

68.652

93.548

0.642
  recA Acinetobacter baylyi ADP1

67.391

94.428

0.636
  recA Helicobacter pylori 26695

63.422

99.413

0.631
  recA Bacillus subtilis subsp. subtilis str. 168

66.154

95.308

0.631
  recA Acinetobacter baumannii D1279779

66.77

94.428

0.63
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.757

100

0.628
  recA Helicobacter pylori strain NCTC11637

63.127

99.413

0.628
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

95.894

0.61
  recA Streptococcus pyogenes NZ131

59.078

100

0.601
  recA Latilactobacillus sakei subsp. sakei 23K

62.154

95.308

0.592
  recA Streptococcus mutans UA159

60.843

97.361

0.592
  recA Streptococcus mitis SK321

60.606

96.774

0.587
  recA Streptococcus mitis NCTC 12261

60.303

96.774

0.584
  recA Streptococcus pneumoniae TIGR4

60

96.774

0.581
  recA Streptococcus pneumoniae R6

60

96.774

0.581
  recA Streptococcus pneumoniae Rx1

60

96.774

0.581
  recA Streptococcus pneumoniae D39

60

96.774

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

93.842

0.563
  recA Lactococcus lactis subsp. cremoris KW2

57.831

97.361

0.563

Multiple sequence alignment