Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IMCC12053_RS03100 Genome accession   NZ_CP012023
Coordinates   645083..646177 (-) Length   364 a.a.
NCBI ID   WP_062215652.1    Uniprot ID   A0A0N9ZCY8
Organism   Celeribacter marinus strain IMCC12053     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 640083..651177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMCC12053_RS03080 (IMCC12053_639) - 640430..641521 (-) 1092 WP_062215644.1 mandelate racemase/muconate lactonizing enzyme family protein -
  IMCC12053_RS03085 (IMCC12053_640) - 641589..641876 (-) 288 WP_062215646.1 DUF1330 domain-containing protein -
  IMCC12053_RS03090 (IMCC12053_641) - 641955..642272 (-) 318 WP_062215647.1 DUF1330 domain-containing protein -
  IMCC12053_RS03095 (IMCC12053_642) alaS 642280..644934 (-) 2655 WP_062215649.1 alanine--tRNA ligase -
  IMCC12053_RS03100 (IMCC12053_643) recA 645083..646177 (-) 1095 WP_062215652.1 recombinase RecA Machinery gene
  IMCC12053_RS03105 (IMCC12053_645) - 646500..648797 (-) 2298 WP_062215654.1 ATP-binding protein -
  IMCC12053_RS03110 (IMCC12053_646) - 648959..650137 (-) 1179 WP_062215656.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 39146.48 Da        Isoelectric Point: 4.7510

>NTDB_id=150477 IMCC12053_RS03100 WP_062215652.1 645083..646177(-) (recA) [Celeribacter marinus strain IMCC12053]
MAKAAAAEMSKNDSNKQKALDSALAQIERQFGKGSIMKLGADNPAQEIESTSTGSLGLDIALGIGGIPKGRIIEIYGPES
SGKTTLTLHCVAEEQKKGGVCAFVDAEHALDPIYARKLGVDLDELLISQPDTGEQALEIVDTLVRSGAVSLVVVDSVAAL
TPKSELEGDMGDSSVGVQARLMSQAMRKLTGSINRSKCTVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIG
QIKDRDEVVGSETRVKVVKNKVAPPFKQVEFDIMYGEGISKTGELLDLGVKAGVVDKAGSWFSYGDERIGQGRENAKRFL
KENSRFALEIEDKIRASHGLEFDLAEEFAAIEETTDVVEGDEAE

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=150477 IMCC12053_RS03100 WP_062215652.1 645083..646177(-) (recA) [Celeribacter marinus strain IMCC12053]
ATGGCTAAAGCGGCGGCAGCAGAGATGAGCAAAAACGACAGCAACAAGCAAAAGGCACTGGATAGCGCGCTTGCGCAAAT
CGAGCGGCAGTTTGGCAAAGGGTCGATCATGAAATTGGGTGCGGATAATCCCGCCCAAGAGATCGAATCGACCTCCACCG
GCTCACTTGGCCTTGATATCGCGCTTGGCATCGGTGGTATCCCCAAGGGGCGGATCATTGAGATCTACGGGCCGGAGTCG
TCGGGTAAAACCACGCTCACGCTGCACTGTGTCGCCGAAGAGCAGAAAAAAGGTGGTGTATGCGCCTTTGTCGATGCTGA
ACACGCGCTTGACCCGATCTATGCCCGCAAATTGGGGGTCGACCTTGACGAGTTGCTGATTTCGCAGCCCGACACAGGGG
AGCAAGCCCTCGAAATCGTCGACACTTTGGTGCGCTCTGGCGCGGTGTCGTTGGTTGTCGTCGACTCTGTTGCAGCTTTG
ACGCCAAAATCCGAGTTAGAGGGCGACATGGGCGATAGCTCCGTGGGTGTTCAGGCACGCCTGATGTCACAAGCCATGCG
CAAACTCACAGGCTCGATCAACCGCTCCAAATGTACAGTTATTTTCATCAACCAAATCCGGATGAAAATCGGCGTCATGT
TCGGCTCGCCCGAAACCACAACGGGCGGCAACGCGTTGAAGTTCTACGCCTCTGTACGTCTGGATATTCGCCGCATCGGT
CAAATCAAAGACCGCGATGAGGTCGTCGGCTCCGAGACACGTGTGAAAGTCGTCAAAAACAAAGTGGCACCACCGTTCAA
ACAGGTCGAATTCGATATCATGTACGGTGAGGGCATTTCGAAAACCGGTGAGCTTCTTGATCTTGGGGTCAAGGCGGGTG
TGGTCGACAAGGCTGGCTCATGGTTCTCTTATGGGGATGAACGCATCGGGCAGGGGCGTGAAAACGCCAAGCGGTTCTTG
AAAGAGAACTCCCGCTTTGCTCTTGAGATCGAAGATAAAATTCGCGCATCCCACGGGCTTGAATTCGATCTCGCCGAAGA
GTTCGCAGCCATTGAAGAAACCACAGATGTGGTTGAGGGCGACGAGGCGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0N9ZCY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

67.836

93.956

0.637
  recA Acinetobacter baumannii D1279779

71.207

88.736

0.632
  recA Glaesserella parasuis strain SC1401

70.938

87.912

0.624
  recA Pseudomonas stutzeri DSM 10701

70.062

89.011

0.624
  recA Neisseria gonorrhoeae MS11

68.373

91.209

0.624
  recA Neisseria gonorrhoeae MS11

68.373

91.209

0.624
  recA Neisseria gonorrhoeae strain FA1090

68.373

91.209

0.624
  recA Ralstonia pseudosolanacearum GMI1000

71.338

86.264

0.615
  recA Vibrio cholerae strain A1552

68.731

88.736

0.61
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.731

88.736

0.61
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.273

90.659

0.61
  recA Bacillus subtilis subsp. subtilis str. 168

67.378

90.11

0.607
  recA Helicobacter pylori 26695

66.463

90.11

0.599
  recA Helicobacter pylori strain NCTC11637

66.159

90.11

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.286

92.308

0.593
  recA Streptococcus pyogenes NZ131

61.605

95.879

0.591
  recA Streptococcus pneumoniae Rx1

63.314

92.857

0.588
  recA Streptococcus pneumoniae D39

63.314

92.857

0.588
  recA Streptococcus pneumoniae TIGR4

63.314

92.857

0.588
  recA Streptococcus pneumoniae R6

63.314

92.857

0.588
  recA Streptococcus mitis SK321

63.018

92.857

0.585
  recA Streptococcus mitis NCTC 12261

63.018

92.857

0.585
  recA Lactococcus lactis subsp. cremoris KW2

62.575

91.758

0.574
  recA Streptococcus mutans UA159

59.942

95.33

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

60.472

93.132

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.412

93.407

0.555

Multiple sequence alignment