Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACJ67_RS04940 Genome accession   NZ_CP012020
Coordinates   1025027..1026055 (+) Length   342 a.a.
NCBI ID   WP_018985823.1    Uniprot ID   A0A0K0SUC8
Organism   Methylophilus sp. TWE2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1020027..1031055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJ67_RS04905 (ACJ67_04905) - 1020613..1021431 (-) 819 WP_197080667.1 PDZ domain-containing protein -
  ACJ67_RS04910 (ACJ67_04910) mog 1021472..1022122 (+) 651 WP_197080688.1 molybdopterin adenylyltransferase -
  ACJ67_RS04915 (ACJ67_04915) - 1022137..1022493 (+) 357 WP_049638117.1 VanZ family protein -
  ACJ67_RS04920 (ACJ67_04920) thiL 1022486..1023433 (+) 948 WP_049638118.1 thiamine-phosphate kinase -
  ACJ67_RS04925 (ACJ67_04925) - 1023495..1023923 (+) 429 WP_369799110.1 phosphatidylglycerophosphatase A -
  ACJ67_RS04930 (ACJ67_04930) - 1023923..1024429 (+) 507 WP_049638120.1 CinA family protein -
  ACJ67_RS04935 (ACJ67_04935) - 1024449..1024793 (-) 345 WP_049638121.1 hypothetical protein -
  ACJ67_RS04940 (ACJ67_04940) recA 1025027..1026055 (+) 1029 WP_018985823.1 recombinase RecA Machinery gene
  ACJ67_RS04945 (ACJ67_04945) recX 1026061..1026519 (+) 459 WP_049638122.1 recombination regulator RecX -
  ACJ67_RS04950 (ACJ67_04950) alaS 1026509..1029145 (+) 2637 WP_049638123.1 alanine--tRNA ligase -
  ACJ67_RS04955 (ACJ67_04955) - 1029171..1030400 (+) 1230 WP_049638124.1 aspartate kinase -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36640.92 Da        Isoelectric Point: 4.9465

>NTDB_id=150417 ACJ67_RS04940 WP_018985823.1 1025027..1026055(+) (recA) [Methylophilus sp. TWE2]
MDDNKSKALAAALSQIEKQFGKGSIMRMGDADIGEDLQVVSTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLTLSAI
AEMQKLGGVAAFIDAEHALDPQYAAKLGVNVPELLISQPDTGEQALEIADMLVRSGSVDIVVVDSVAALTPRAEIEGEMG
DSHMGLQARLMSQALRKLTGNIKRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGAIKKGDEVIGS
ETKVKVIKNKVAPPFKQAEFDIMYGEGISRLGEIIELGTNLKLVEKSGAWYSYNGEKIGQGKENAKEFLRENPAIAAEIE
AKIRDNSNVLADSMTAARSEDD

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=150417 ACJ67_RS04940 WP_018985823.1 1025027..1026055(+) (recA) [Methylophilus sp. TWE2]
ATGGATGACAACAAAAGCAAAGCGCTCGCCGCCGCACTTTCCCAAATTGAAAAGCAGTTCGGCAAAGGCTCCATTATGCG
CATGGGCGATGCTGATATCGGCGAAGACCTGCAAGTGGTTTCCACCGGCTCACTGGGCCTGGATATCGCACTGGGGGTGG
GTGGCTTGCCACGTGGCCGTATTATCGAAATTTATGGCCCTGAATCTTCCGGTAAAACCACATTGACTTTGTCTGCCATT
GCCGAAATGCAAAAGCTGGGTGGTGTGGCCGCATTTATCGATGCTGAGCATGCCCTGGATCCACAGTACGCGGCCAAGCT
GGGCGTAAATGTGCCTGAATTACTGATTTCACAACCTGACACCGGTGAGCAGGCGCTGGAAATTGCCGATATGCTGGTAC
GCTCCGGCTCTGTGGATATCGTGGTTGTTGACTCGGTGGCTGCCTTGACCCCACGTGCCGAAATTGAAGGTGAAATGGGT
GACAGCCACATGGGCTTGCAGGCACGCCTGATGTCACAGGCATTGCGTAAGCTCACTGGTAACATCAAGCGTACCAATAC
GCTGGTGATCTTTATTAACCAGATCCGTATGAAGATCGGTGTCATGTTCGGTAATCCTGAAACGACCACCGGGGGTAACG
CGCTCAAGTTTTACTCTTCTGTCCGCCTTGATATCCGCCGTACTGGTGCGATTAAAAAAGGCGACGAGGTCATTGGCTCC
GAGACCAAGGTGAAGGTGATCAAGAACAAGGTTGCGCCGCCGTTCAAACAGGCTGAATTCGACATCATGTACGGCGAAGG
TATTTCCCGTCTGGGCGAAATCATTGAATTGGGTACGAATTTGAAACTGGTTGAGAAATCAGGTGCGTGGTACAGCTACA
ACGGTGAAAAAATCGGCCAGGGTAAAGAAAACGCTAAAGAGTTCCTGCGCGAAAATCCAGCCATTGCGGCCGAAATTGAA
GCCAAGATTCGCGACAACTCCAATGTGCTGGCAGATAGCATGACTGCGGCCAGAAGTGAGGATGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K0SUC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

79.618

91.813

0.731
  recA Neisseria gonorrhoeae MS11

76.543

94.737

0.725
  recA Neisseria gonorrhoeae strain FA1090

76.543

94.737

0.725
  recA Neisseria gonorrhoeae MS11

76.543

94.737

0.725
  recA Pseudomonas stutzeri DSM 10701

76.235

94.737

0.722
  recA Acinetobacter baylyi ADP1

71.93

100

0.719
  recA Vibrio cholerae strain A1552

70.845

100

0.711
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.845

100

0.711
  recA Glaesserella parasuis strain SC1401

70.796

99.123

0.702
  recA Acinetobacter baumannii D1279779

73.538

95.029

0.699
  recA Bacillus subtilis subsp. subtilis str. 168

69.35

94.444

0.655
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.306

100

0.655
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.781

96.199

0.652
  recA Streptococcus mitis SK321

63.158

100

0.632
  recA Helicobacter pylori strain NCTC11637

65.138

95.614

0.623
  recA Streptococcus mutans UA159

65.337

95.322

0.623
  recA Streptococcus pyogenes NZ131

65.337

95.322

0.623
  recA Helicobacter pylori 26695

64.832

95.614

0.62
  recA Streptococcus pneumoniae TIGR4

65.432

94.737

0.62
  recA Streptococcus pneumoniae Rx1

65.432

94.737

0.62
  recA Streptococcus pneumoniae D39

65.432

94.737

0.62
  recA Streptococcus pneumoniae R6

65.432

94.737

0.62
  recA Streptococcus mitis NCTC 12261

65.123

94.737

0.617
  recA Latilactobacillus sakei subsp. sakei 23K

65.217

94.152

0.614
  recA Lactococcus lactis subsp. cremoris KW2

61.31

98.246

0.602
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.733

94.152

0.591

Multiple sequence alignment