Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | AB688_RS22000 | Genome accession | NZ_CP011789 |
| Coordinates | 4890654..4891721 (-) | Length | 355 a.a. |
| NCBI ID | WP_063545891.1 | Uniprot ID | - |
| Organism | Pseudomonas putida strain PC2 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 4886161..4919726 | 4890654..4891721 | within | 0 |
Gene organization within MGE regions
Location: 4886161..4919726
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB688_RS21970 (AB688_22000) | erdR | 4886161..4886811 (-) | 651 | WP_054891023.1 | response regulator transcription factor ErdR | - |
| AB688_RS27600 | - | 4887092..4887232 (+) | 141 | Protein_4418 | hypothetical protein | - |
| AB688_RS21975 (AB688_22005) | - | 4887200..4887778 (-) | 579 | Protein_4419 | tRNA-uridine aminocarboxypropyltransferase | - |
| AB688_RS21980 (AB688_22010) | - | 4888001..4888423 (+) | 423 | WP_063545888.1 | quorum-sensing-regulated virulence factor family protein | - |
| AB688_RS21985 (AB688_22015) | - | 4888425..4888628 (-) | 204 | WP_054891026.1 | hypothetical protein | - |
| AB688_RS21990 (AB688_22020) | - | 4888985..4890103 (+) | 1119 | WP_063545889.1 | LOG family protein | - |
| AB688_RS21995 (AB688_22025) | recX | 4890167..4890586 (-) | 420 | WP_063545890.1 | recombination regulator RecX | - |
| AB688_RS22000 (AB688_22030) | recA | 4890654..4891721 (-) | 1068 | WP_063545891.1 | recombinase RecA | Machinery gene |
| AB688_RS22005 (AB688_22035) | - | 4891826..4892308 (-) | 483 | WP_063545892.1 | CinA family protein | - |
| AB688_RS22010 (AB688_22040) | - | 4892368..4892868 (-) | 501 | WP_081255303.1 | lysis system i-spanin subunit Rz | - |
| AB688_RS22015 (AB688_22045) | - | 4892862..4893410 (-) | 549 | WP_063545893.1 | glycoside hydrolase family 19 protein | - |
| AB688_RS22020 (AB688_22050) | - | 4893481..4893837 (-) | 357 | WP_063545894.1 | hypothetical protein | - |
| AB688_RS27290 | - | 4893890..4894033 (-) | 144 | Protein_4429 | zinc finger domain-containing protein | - |
| AB688_RS22030 (AB688_22060) | - | 4894064..4895098 (-) | 1035 | WP_063545896.1 | phage late control D family protein | - |
| AB688_RS22035 (AB688_22065) | - | 4895139..4895345 (-) | 207 | WP_063545897.1 | tail protein X | - |
| AB688_RS22040 (AB688_22070) | - | 4895320..4896165 (-) | 846 | WP_063545898.1 | phage tail protein | - |
| AB688_RS22045 (AB688_22075) | - | 4896181..4898211 (-) | 2031 | WP_155738231.1 | hypothetical protein | - |
| AB688_RS22050 (AB688_22080) | - | 4898336..4898638 (-) | 303 | WP_063545900.1 | phage tail assembly protein | - |
| AB688_RS22055 (AB688_22085) | - | 4898650..4899159 (-) | 510 | WP_054891039.1 | phage major tail tube protein | - |
| AB688_RS22060 (AB688_22090) | - | 4899173..4900339 (-) | 1167 | WP_063545901.1 | phage tail sheath family protein | - |
| AB688_RS22065 | - | 4900446..4901042 (-) | 597 | WP_063545902.1 | hypothetical protein | - |
| AB688_RS26610 | - | 4901082..4902818 (-) | 1737 | WP_081255306.1 | phage tail protein | - |
| AB688_RS22075 (AB688_22105) | - | 4902811..4903419 (-) | 609 | WP_063545903.1 | phage tail protein I | - |
| AB688_RS22080 (AB688_22110) | - | 4903421..4904302 (-) | 882 | WP_063545904.1 | baseplate assembly protein | - |
| AB688_RS22085 (AB688_22115) | - | 4904299..4904625 (-) | 327 | WP_063545905.1 | GPW/gp25 family protein | - |
| AB688_RS22090 (AB688_22120) | - | 4904713..4905273 (-) | 561 | WP_063545906.1 | phage baseplate assembly protein V | - |
| AB688_RS22095 (AB688_22125) | - | 4905270..4905767 (-) | 498 | WP_063545907.1 | hypothetical protein | - |
| AB688_RS22100 (AB688_22130) | - | 4905779..4906102 (-) | 324 | WP_054891048.1 | phage holin family protein | - |
| AB688_RS22105 (AB688_22135) | - | 4906643..4907377 (-) | 735 | WP_063545908.1 | LexA family transcriptional regulator | - |
| AB688_RS22110 (AB688_22140) | - | 4907442..4907882 (-) | 441 | WP_063545909.1 | hypothetical protein | - |
| AB688_RS22115 (AB688_22145) | mutS | 4908030..4910600 (+) | 2571 | WP_063545910.1 | DNA mismatch repair protein MutS | - |
| AB688_RS22120 (AB688_22150) | fdxA | 4910737..4911060 (+) | 324 | WP_054891051.1 | ferredoxin FdxA | - |
| AB688_RS22125 (AB688_22155) | rpoS | 4911564..4912571 (-) | 1008 | WP_054891052.1 | RNA polymerase sigma factor RpoS | - |
| AB688_RS22130 (AB688_22160) | - | 4912681..4913541 (-) | 861 | WP_063545911.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| AB688_RS22135 (AB688_22165) | - | 4913730..4914368 (-) | 639 | WP_162714454.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| AB688_RS22140 (AB688_22170) | surE | 4914410..4915159 (-) | 750 | WP_054891055.1 | 5'/3'-nucleotidase SurE | - |
| AB688_RS22145 (AB688_22175) | truD | 4915147..4916205 (-) | 1059 | WP_063545912.1 | tRNA pseudouridine(13) synthase TruD | - |
| AB688_RS22150 (AB688_22180) | ispF | 4916202..4916675 (-) | 474 | WP_054891057.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| AB688_RS22155 (AB688_22185) | fghA | 4916748..4917602 (-) | 855 | WP_063545913.1 | S-formylglutathione hydrolase | - |
| AB688_RS22160 (AB688_22190) | - | 4917611..4918723 (-) | 1113 | WP_009686067.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| AB688_RS22165 (AB688_22195) | - | 4918830..4919726 (+) | 897 | WP_054891059.1 | LysR substrate-binding domain-containing protein | - |
Sequence
Protein
Download Length: 355 a.a. Molecular weight: 37604.94 Da Isoelectric Point: 5.3157
>NTDB_id=148682 AB688_RS22000 WP_063545891.1 4890654..4891721(-) (recA) [Pseudomonas putida strain PC2]
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVAQGLVEKSGAWYSYQGNKIGQGKANAAKYLQENPAIGSEIEK
QIREKLLTSGAVAAAGKAAAAEADADDMADAEAGY
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVAQGLVEKSGAWYSYQGNKIGQGKANAAKYLQENPAIGSEIEK
QIREKLLTSGAVAAAGKAAAAEADADDMADAEAGY
Nucleotide
Download Length: 1068 bp
>NTDB_id=148682 AB688_RS22000 WP_063545891.1 4890654..4891721(-) (recA) [Pseudomonas putida strain PC2]
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGCCAATTCGGCAAGGGCGCAGTCATGCG
CATGGGCGATCACGAACGCCAGGCCATCCCGGCCATCTCCACCGGCTCGCTGGGCCTGGACATCGCCCTCGGCATCGGCG
GTCTGCCGAAGGGCCGTATCGTCGAGATCTACGGCCCGGAATCCTCGGGCAAGACCACGCTGACGCTGTCGGTCATCGCC
GAGGCCCAGAAGAACGGCGCCACCTGCGCCTTCGTCGACGCCGAGCATGCCCTCGACCCTGAGTACGCTGGCAAGCTCGG
CGTCAACGTCGATGACCTGCTGGTCTCGCAGCCAGACACTGGCGAACAGGCCCTGGAAATCACCGATATGCTGGTGCGTT
CCAACGCTGTCGACGTGATCATCGTCGACTCCGTGGCGGCCCTGGTACCCAAGGCTGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTCGGCCTGCAGGCCCGTCTGATGTCCCAGGCACTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGTATGAAAATTGGCGTGATGTTTGGTAGCCCGGAAACCACCACCGGCGGTAACGCCC
TGAAGTTCTACGCCTCGGTCCGTCTGGACATCCGTCGTACTGGCGCGGTGAAGGAAGGTGACGAAGTGGTGGGCAGTGAA
ACCCGCGTCAAGATCGTCAAGAACAAGGTTTCGCCACCTTTCCGTCAGGCCGAGTTCCAGATTCTCTACGGCAAGGGTAT
CTACCGTAACGGCGAGATCATCGACTTGGGCGTCGCCCAAGGCTTGGTCGAGAAGTCCGGCGCCTGGTACAGCTATCAGG
GCAACAAGATCGGCCAAGGCAAGGCCAACGCTGCCAAGTATTTGCAAGAGAACCCGGCCATCGGTTCGGAAATCGAGAAG
CAGATTCGTGAGAAGCTGCTGACCTCCGGCGCTGTCGCCGCTGCTGGCAAGGCCGCCGCCGCTGAAGCTGATGCCGACGA
TATGGCTGATGCTGAAGCCGGTTATTGA
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGCCAATTCGGCAAGGGCGCAGTCATGCG
CATGGGCGATCACGAACGCCAGGCCATCCCGGCCATCTCCACCGGCTCGCTGGGCCTGGACATCGCCCTCGGCATCGGCG
GTCTGCCGAAGGGCCGTATCGTCGAGATCTACGGCCCGGAATCCTCGGGCAAGACCACGCTGACGCTGTCGGTCATCGCC
GAGGCCCAGAAGAACGGCGCCACCTGCGCCTTCGTCGACGCCGAGCATGCCCTCGACCCTGAGTACGCTGGCAAGCTCGG
CGTCAACGTCGATGACCTGCTGGTCTCGCAGCCAGACACTGGCGAACAGGCCCTGGAAATCACCGATATGCTGGTGCGTT
CCAACGCTGTCGACGTGATCATCGTCGACTCCGTGGCGGCCCTGGTACCCAAGGCTGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTCGGCCTGCAGGCCCGTCTGATGTCCCAGGCACTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGTATGAAAATTGGCGTGATGTTTGGTAGCCCGGAAACCACCACCGGCGGTAACGCCC
TGAAGTTCTACGCCTCGGTCCGTCTGGACATCCGTCGTACTGGCGCGGTGAAGGAAGGTGACGAAGTGGTGGGCAGTGAA
ACCCGCGTCAAGATCGTCAAGAACAAGGTTTCGCCACCTTTCCGTCAGGCCGAGTTCCAGATTCTCTACGGCAAGGGTAT
CTACCGTAACGGCGAGATCATCGACTTGGGCGTCGCCCAAGGCTTGGTCGAGAAGTCCGGCGCCTGGTACAGCTATCAGG
GCAACAAGATCGGCCAAGGCAAGGCCAACGCTGCCAAGTATTTGCAAGAGAACCCGGCCATCGGTTCGGAAATCGAGAAG
CAGATTCGTGAGAAGCTGCTGACCTCCGGCGCTGTCGCCGCTGCTGGCAAGGCCGCCGCCGCTGAAGCTGATGCCGACGA
TATGGCTGATGCTGAAGCCGGTTATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.