Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB656_RS02805 Genome accession   NZ_CP011786
Coordinates   704009..705196 (-) Length   395 a.a.
NCBI ID   WP_033504111.1    Uniprot ID   -
Organism   Bifidobacterium actinocoloniiforme DSM 22766     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 699009..710196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB656_RS02795 (AB656_02805) hpf 701918..702586 (-) 669 WP_033504109.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  AB656_RS02800 (AB656_02810) - 703135..703668 (-) 534 WP_051905428.1 regulatory protein RecX -
  AB656_RS02805 (AB656_02815) recA 704009..705196 (-) 1188 WP_033504111.1 recombinase RecA Machinery gene
  AB656_RS02810 (AB656_02820) - 705372..705605 (-) 234 WP_033504112.1 DUF3046 domain-containing protein -
  AB656_RS02815 (AB656_02825) - 705702..706220 (-) 519 WP_033504113.1 helix-turn-helix domain-containing protein -
  AB656_RS02820 (AB656_02830) - 706321..706878 (-) 558 WP_033504114.1 CinA family protein -
  AB656_RS02825 (AB656_02835) pgsA 706875..707492 (-) 618 WP_051905289.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 395 a.a.        Molecular weight: 41663.34 Da        Isoelectric Point: 5.8382

>NTDB_id=148653 AB656_RS02805 WP_033504111.1 704009..705196(-) (recA) [Bifidobacterium actinocoloniiforme DSM 22766]
MAHQTNSKAKSKSKVEDVDGMDPRRKAALDTALAQVEKNFGKGSAMRLGDKPVQDVEVIPTGSLALDMALGIGGLPRGRI
VEIYGPESSGKTTLALHAVANAQKNGGVAAFIDAEHALDPEYARKLGVDTDSLIVSQPDNGEQALEIADMLIRSGALDVI
VIDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKMTGALSQANTTAIFINQLREKIGVFFGSPETTTGGKALKFYSSV
RLDIRRIQTLKNGDEAVGNRTKVKVVKNKMAPPFKIAEFDILYGEGISKEGSVIDMALQANVIKKSGSWFTYEGDQLGQG
RENVRQFLKDNPGLTQEIEDKVKIAFGLKPKAEDGGADAQGGGNQPAAVADASGIEKAPTEAGSPSAPVLTAQAV

Nucleotide


Download         Length: 1188 bp        

>NTDB_id=148653 AB656_RS02805 WP_033504111.1 704009..705196(-) (recA) [Bifidobacterium actinocoloniiforme DSM 22766]
ATGGCACATCAGACCAACAGCAAAGCCAAGTCCAAGTCCAAAGTCGAGGATGTCGACGGCATGGATCCGCGGCGCAAGGC
GGCCCTGGACACGGCTCTGGCGCAGGTGGAGAAGAATTTCGGCAAGGGATCAGCCATGCGTCTGGGCGACAAGCCGGTCC
AAGACGTGGAAGTGATCCCCACTGGTTCCCTGGCTCTGGATATGGCTTTGGGCATCGGTGGCCTGCCCAGGGGCAGGATT
GTCGAGATTTACGGACCGGAGTCCTCCGGTAAGACAACCCTGGCTTTGCATGCGGTGGCCAATGCCCAGAAGAACGGCGG
GGTAGCGGCCTTCATCGACGCCGAGCACGCGTTGGACCCGGAGTACGCCCGCAAGCTCGGCGTGGACACCGACTCGCTGA
TCGTCTCGCAACCGGATAACGGCGAGCAGGCACTGGAAATCGCCGACATGTTGATCCGCTCCGGCGCCCTGGACGTGATC
GTGATTGACTCGGTGGCGGCCCTGGTGCCCAAGGCCGAGATCGATGGCGATATGGGCGACAGCCATGTCGGCCTGCAAGC
CCGACTGATGAGCCAGGCCCTGCGCAAGATGACCGGAGCGCTCTCCCAGGCCAACACCACCGCCATCTTCATCAACCAGT
TGCGCGAGAAAATCGGCGTTTTCTTCGGCAGCCCCGAGACCACAACCGGTGGCAAGGCCCTGAAATTCTACTCTTCGGTT
CGCCTGGACATCCGTCGGATTCAGACCTTGAAGAACGGTGACGAGGCCGTGGGCAACCGCACCAAGGTCAAGGTGGTCAA
GAATAAGATGGCTCCGCCCTTCAAGATCGCCGAGTTCGACATCCTCTACGGGGAGGGCATCTCCAAGGAAGGCTCGGTCA
TCGACATGGCCCTCCAAGCCAATGTGATCAAGAAATCCGGTTCCTGGTTTACCTACGAGGGCGACCAACTGGGGCAGGGC
CGGGAGAACGTCCGCCAATTCCTGAAGGACAACCCAGGGCTGACCCAGGAGATCGAAGACAAGGTCAAGATCGCCTTTGG
TTTGAAGCCCAAGGCGGAAGATGGGGGCGCCGACGCTCAGGGTGGTGGAAACCAGCCTGCTGCGGTTGCCGATGCATCGG
GGATTGAGAAAGCGCCGACCGAGGCCGGCTCGCCCAGTGCCCCTGTTCTGACGGCCCAGGCGGTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(28-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.462

82.278

0.547
  recA Acinetobacter baylyi ADP1

66.873

81.772

0.547
  recA Bacillus subtilis subsp. subtilis str. 168

66.358

82.025

0.544
  recA Acinetobacter baumannii D1279779

66.563

81.772

0.544
  recA Neisseria gonorrhoeae MS11

64.742

83.291

0.539
  recA Neisseria gonorrhoeae MS11

64.742

83.291

0.539
  recA Neisseria gonorrhoeae strain FA1090

64.742

83.291

0.539
  recA Glaesserella parasuis strain SC1401

60.92

88.101

0.537
  recA Ralstonia pseudosolanacearum GMI1000

67.302

79.747

0.537
  recA Streptococcus pneumoniae Rx1

58.127

91.899

0.534
  recA Streptococcus pneumoniae TIGR4

58.127

91.899

0.534
  recA Streptococcus pneumoniae R6

58.127

91.899

0.534
  recA Streptococcus pneumoniae D39

58.127

91.899

0.534
  recA Pseudomonas stutzeri DSM 10701

65.325

81.772

0.534
  recA Lactococcus lactis subsp. cremoris KW2

59.885

88.354

0.529
  recA Helicobacter pylori strain NCTC11637

63.415

83.038

0.527
  recA Helicobacter pylori 26695

63.415

83.038

0.527
  recA Streptococcus pyogenes NZ131

62.727

83.544

0.524
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.727

83.544

0.524
  recA Streptococcus mitis SK321

62.805

83.038

0.522
  recA Streptococcus mitis NCTC 12261

62.805

83.038

0.522
  recA Streptococcus mutans UA159

62.5

83.038

0.519
  recA Latilactobacillus sakei subsp. sakei 23K

62.121

83.544

0.519
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.158

81.772

0.516
  recA Vibrio cholerae strain A1552

63.158

81.772

0.516
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.61

81.772

0.504

Multiple sequence alignment