Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABE85_RS23770 Genome accession   NZ_CP011514
Coordinates   5411868..5412914 (+) Length   348 a.a.
NCBI ID   WP_067280666.1    Uniprot ID   A0A1A9HS73
Organism   Mitsuaria sp. 7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5406868..5417914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABE85_RS23755 (ABE85_23770) rodA 5408181..5409335 (+) 1155 WP_067280655.1 rod shape-determining protein RodA -
  ABE85_RS23760 (ABE85_23775) - 5409364..5410869 (-) 1506 WP_067280658.1 sensor histidine kinase -
  ABE85_RS23765 (ABE85_23780) - 5410878..5411549 (-) 672 WP_067280662.1 response regulator transcription factor -
  ABE85_RS23770 (ABE85_23785) recA 5411868..5412914 (+) 1047 WP_067280666.1 recombinase RecA Machinery gene
  ABE85_RS23775 (ABE85_23790) - 5412930..5413493 (+) 564 WP_067280669.1 regulatory protein RecX -
  ABE85_RS23780 (ABE85_23795) sucC 5413932..5415092 (+) 1161 WP_067280673.1 ADP-forming succinate--CoA ligase subunit beta -
  ABE85_RS23785 (ABE85_23800) sucD 5415120..5416013 (+) 894 WP_067280677.1 succinate--CoA ligase subunit alpha -
  ABE85_RS23790 (ABE85_23805) - 5416207..5416941 (+) 735 WP_067280680.1 TerC family protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37169.79 Da        Isoelectric Point: 5.0592

>NTDB_id=146508 ABE85_RS23770 WP_067280666.1 5411868..5412914(+) (recA) [Mitsuaria sp. 7]
MDAPVKNANTEKAKALQAALAQIEKQFGKGSIMRLAEGEKIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT
TLTLQVIAQMQKLDGVCAFIDAEHALDVQYAQKLGVNLQELLISQPDTGEQALEIVDSLVRSGSVDLIVIDSVAALTPKA
ELEGEMGDSLPGLQARLMSQALRKLTATIKKTNCTVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKK
GEEVIGSETKVKVVKNKVAPPFKTAEFDILYGEGISREGEIIDMGVANKIVEKAGSWYAYSGEKIGQGKDNAREFLRENA
DLAVEIENKIRESLGIPLLGATPGGAAE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=146508 ABE85_RS23770 WP_067280666.1 5411868..5412914(+) (recA) [Mitsuaria sp. 7]
ATGGACGCCCCCGTGAAGAACGCCAACACCGAAAAAGCCAAGGCCCTGCAGGCCGCCCTCGCCCAGATCGAAAAGCAGTT
CGGCAAGGGCTCCATCATGCGGCTGGCCGAAGGCGAGAAGATCGAGGACATCCAGGTCGTCTCCACCGGCTCGCTGGGCC
TGGACATCGCGCTAGGCGTCGGCGGTCTGCCGCGCGGACGCGTGGTCGAGATCTACGGCCCGGAATCCTCGGGCAAGACC
ACGCTGACCCTTCAGGTCATCGCCCAGATGCAGAAGTTGGACGGCGTGTGCGCCTTCATCGACGCTGAACACGCGCTGGA
CGTCCAGTACGCGCAGAAGCTCGGCGTCAACCTGCAAGAGCTGCTGATCAGCCAGCCCGACACCGGCGAACAGGCGCTGG
AGATCGTGGACTCGCTGGTGCGCTCGGGGTCCGTCGACCTGATCGTCATCGACTCGGTCGCCGCGCTGACGCCGAAGGCG
GAACTCGAAGGCGAGATGGGCGATTCGCTGCCCGGCCTGCAGGCCCGTCTGATGAGCCAGGCGCTGCGCAAGCTGACGGC
CACCATCAAGAAGACCAACTGCACCGTCGTCTTCATCAACCAGATCCGGATGAAGATCGGCGTCATGTTCGGCAGCCCGG
AGACGACCACCGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGTCGCATCGGCTCGATCAAGAAG
GGTGAGGAAGTCATCGGCTCCGAGACCAAGGTCAAGGTCGTCAAGAACAAGGTCGCGCCTCCGTTCAAGACGGCGGAGTT
CGACATCCTCTACGGTGAAGGCATCAGCCGCGAGGGCGAGATCATCGACATGGGCGTGGCCAACAAGATCGTCGAGAAGG
CCGGCTCCTGGTACGCCTACAGCGGCGAGAAGATCGGCCAAGGCAAAGACAACGCACGCGAGTTCCTGCGCGAGAACGCG
GACCTGGCGGTCGAGATCGAGAACAAGATCCGCGAATCCCTGGGCATTCCGCTGCTGGGCGCAACGCCCGGCGGTGCCGC
CGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A9HS73

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.445

91.667

0.756
  recA Neisseria gonorrhoeae strain FA1090

72.561

94.253

0.684
  recA Neisseria gonorrhoeae MS11

72.561

94.253

0.684
  recA Neisseria gonorrhoeae MS11

72.561

94.253

0.684
  recA Glaesserella parasuis strain SC1401

72.531

93.103

0.675
  recA Acinetobacter baylyi ADP1

71.827

92.816

0.667
  recA Pseudomonas stutzeri DSM 10701

70.859

93.678

0.664
  recA Acinetobacter baumannii D1279779

71.517

92.816

0.664
  recA Vibrio cholerae strain A1552

69.632

93.678

0.652
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.632

93.678

0.652
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.163

95.115

0.629
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.046

94.54

0.615
  recA Bacillus subtilis subsp. subtilis str. 168

64.939

94.253

0.612
  recA Helicobacter pylori 26695

64.634

94.253

0.609
  recA Helicobacter pylori strain NCTC11637

64.329

94.253

0.606
  recA Latilactobacillus sakei subsp. sakei 23K

61.515

94.828

0.583
  recA Streptococcus mutans UA159

60.237

96.839

0.583
  recA Lactococcus lactis subsp. cremoris KW2

59.412

97.701

0.58
  recA Streptococcus mitis SK321

58.944

97.989

0.578
  recA Streptococcus mitis NCTC 12261

58.944

97.989

0.578
  recA Streptococcus pneumoniae D39

59.821

96.552

0.578
  recA Streptococcus pneumoniae R6

59.821

96.552

0.578
  recA Streptococcus pneumoniae TIGR4

59.821

96.552

0.578
  recA Streptococcus pyogenes NZ131

59.821

96.552

0.578
  recA Streptococcus pneumoniae Rx1

59.821

96.552

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

92.241

0.56

Multiple sequence alignment