Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AA650_RS07965 Genome accession   NZ_CP011456
Coordinates   1824388..1825464 (-) Length   358 a.a.
NCBI ID   WP_053538605.1    Uniprot ID   -
Organism   Anabaena sp. WA102 isolate     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1819388..1830464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA650_RS29075 - 1819654..1819779 (-) 126 WP_257720897.1 hypothetical protein -
  AA650_RS07940 (AA650_07970) - 1819784..1821061 (-) 1278 WP_168634830.1 AAA family ATPase -
  AA650_RS07945 (AA650_07975) pgsA 1821083..1821595 (-) 513 WP_027402315.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AA650_RS29285 (AA650_07980) - 1821863..1822063 (+) 201 WP_053541223.1 hypothetical protein -
  AA650_RS07955 (AA650_07985) queG 1822291..1823265 (+) 975 WP_053538603.1 tRNA epoxyqueuosine(34) reductase QueG -
  AA650_RS07960 (AA650_07990) - 1823240..1823875 (+) 636 WP_053538604.1 HAD-IA family hydrolase -
  AA650_RS07965 (AA650_07995) recA 1824388..1825464 (-) 1077 WP_053538605.1 recombinase RecA Machinery gene
  AA650_RS07970 (AA650_08000) - 1825710..1826075 (+) 366 WP_053538606.1 DUF1818 family protein -
  AA650_RS07980 (AA650_08010) rpiA 1826958..1827668 (-) 711 WP_027402347.1 ribose-5-phosphate isomerase RpiA -
  AA650_RS07985 (AA650_08015) - 1827833..1828294 (-) 462 WP_053538607.1 tetratricopeptide repeat protein -
  AA650_RS07990 (AA650_08020) - 1828299..1829240 (-) 942 WP_053538608.1 homogentisate phytyltransferase -
  AA650_RS07995 (AA650_08025) - 1829406..1830248 (-) 843 WP_053538609.1 methyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38357.80 Da        Isoelectric Point: 4.9789

>NTDB_id=146137 AA650_RS07965 WP_053538605.1 1824388..1825464(-) (recA) [Anabaena sp. WA102 isolate]
MAANTETSGKQKALNIVLGQIERSFGKGAIMRLGDATRMKVETISTGALTLDLALGGGLPKGRVIEIYGPESSGKTTIAL
HALAEVQRNGGIAAFVDAEHALDPTYAAALGVDIDNLLVSQPDNGESALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEG
DMGDIHVGLQARLMSQALRKITGNIGKSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGTDE
FGNRVKVKVAKNKVAPPFRIAEFDIIFGKGVSTIGCLVDIAEETGVLLRKGAWYSYSGENISQGRDNAIKYLEEKPEFAA
KIKEQVLEKLDKGAVVSANSVVQPHDVEEEEEIELEEE

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=146137 AA650_RS07965 WP_053538605.1 1824388..1825464(-) (recA) [Anabaena sp. WA102 isolate]
ATGGCAGCTAATACTGAGACTTCTGGCAAGCAAAAAGCGTTAAATATCGTCCTGGGACAAATTGAGCGCAGTTTCGGAAA
GGGAGCAATTATGCGCTTAGGTGATGCCACCCGGATGAAGGTAGAAACAATATCCACCGGGGCGCTCACTCTAGATTTAG
CCTTGGGTGGTGGTTTACCCAAAGGACGGGTAATCGAAATCTACGGACCAGAAAGTTCTGGTAAAACTACTATTGCCCTC
CATGCCCTCGCAGAAGTGCAAAGAAATGGTGGTATAGCGGCATTTGTAGACGCTGAACACGCATTAGACCCTACCTACGC
CGCTGCATTGGGTGTAGATATTGATAACTTACTTGTTTCTCAACCAGACAATGGTGAATCAGCATTAGAAATAGTTGACC
AACTTGTGCGTTCTGCGGCTGTTGATATTGTTGTTATTGACTCCGTTGCCGCTTTAGTTCCCCGCGCTGAAATTGAAGGG
GATATGGGGGATATTCACGTAGGTTTACAAGCTCGGTTAATGAGTCAAGCCCTACGGAAAATTACTGGTAATATTGGTAA
ATCTGGATGCACAGTTATTTTTATTAACCAGTTGCGGCAAAAAATCGGTGTCACCTATGGTAGTCCAGAAACTACAACGG
GTGGTAATGCGCTGAAATTTTACGCTTCCGTGCGCTTGGATATTCGCAGAATTCAAACTTTAAAAAAAGGAACTGATGAA
TTTGGCAACCGGGTCAAAGTCAAAGTAGCGAAAAATAAAGTTGCACCACCTTTTAGAATTGCCGAATTTGACATTATCTT
TGGCAAAGGAGTTTCTACCATTGGTTGTTTAGTGGATATAGCCGAAGAAACTGGTGTTCTTCTTCGTAAAGGTGCTTGGT
ATAGCTACAGTGGTGAAAATATTTCCCAAGGTAGAGATAACGCGATTAAGTATTTAGAAGAAAAACCAGAATTTGCTGCC
AAAATTAAAGAACAGGTTCTGGAAAAACTCGATAAAGGGGCTGTAGTTTCTGCTAATTCTGTAGTTCAACCCCATGATGT
TGAGGAGGAAGAAGAGATTGAGTTAGAAGAGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

63.218

97.207

0.615
  recA Acinetobacter baumannii D1279779

63.218

97.207

0.615
  recA Pseudomonas stutzeri DSM 10701

63.69

93.855

0.598
  recA Ralstonia pseudosolanacearum GMI1000

62.84

92.458

0.581
  recA Streptococcus mitis NCTC 12261

56.284

100

0.575
  recA Streptococcus pneumoniae TIGR4

58.028

99.162

0.575
  recA Streptococcus pneumoniae R6

58.028

99.162

0.575
  recA Streptococcus pneumoniae D39

58.028

99.162

0.575
  recA Streptococcus pneumoniae Rx1

58.028

99.162

0.575
  recA Helicobacter pylori strain NCTC11637

59.078

96.927

0.573
  recA Helicobacter pylori 26695

59.078

96.927

0.573
  recA Streptococcus mitis SK321

56.825

100

0.57
  recA Bacillus subtilis subsp. subtilis str. 168

61.145

92.737

0.567
  recA Glaesserella parasuis strain SC1401

57.507

98.603

0.567
  recA Neisseria gonorrhoeae MS11

63.323

89.106

0.564
  recA Neisseria gonorrhoeae strain FA1090

63.323

89.106

0.564
  recA Neisseria gonorrhoeae MS11

63.323

89.106

0.564
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.491

89.944

0.553
  recA Vibrio cholerae strain A1552

61.491

89.944

0.553
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.407

94.693

0.553
  recA Streptococcus mutans UA159

60.681

90.223

0.547
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.129

89.106

0.545
  recA Streptococcus pyogenes NZ131

59.202

91.061

0.539
  recA Latilactobacillus sakei subsp. sakei 23K

60.377

88.827

0.536
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.716

93.575

0.531
  recA Lactococcus lactis subsp. cremoris KW2

58.696

89.944

0.528

Multiple sequence alignment