Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   lsr_RS05640 Genome accession   NZ_CP011403
Coordinates   1119418..1120563 (-) Length   381 a.a.
NCBI ID   WP_003700567.1    Uniprot ID   F5VCR9
Organism   Ligilactobacillus salivarius str. Ren     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1114418..1125563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  lsr_RS05630 (LsR_01073) mutS 1114880..1117510 (-) 2631 WP_047035775.1 DNA mismatch repair protein MutS -
  lsr_RS05635 (LsR_01074) rny 1117678..1119243 (-) 1566 WP_003700566.1 ribonuclease Y -
  lsr_RS05640 (LsR_01075) recA 1119418..1120563 (-) 1146 WP_003700567.1 recombinase RecA Machinery gene
  lsr_RS05645 (LsR_01076) pgsA 1120756..1121343 (-) 588 WP_003700569.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  lsr_RS05650 (LsR_01077) - 1121396..1122325 (-) 930 WP_003704681.1 helix-turn-helix domain-containing protein -
  lsr_RS05655 (LsR_01078) ymfI 1122407..1123132 (-) 726 WP_047035776.1 elongation factor P 5-aminopentanone reductase -
  lsr_RS05660 (LsR_01079) yfmH 1123138..1124439 (-) 1302 WP_047035777.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 41021.30 Da        Isoelectric Point: 4.7333

>NTDB_id=145615 lsr_RS05640 WP_003700567.1 1119418..1120563(-) (recA) [Ligilactobacillus salivarius str. Ren]
MANDKNKVQGDQPEERLKALDAALKKIEKKFGKGSIMKMGGKVDTKISTISSGSIAIDAGLGVGGYPRGRIIEIYGPESS
GKTTVALHAVAEVQKRGGTAAYIDAENALDPAYATALGVNIDELLLSQPDTGEQGLEIADALVSSGAIDIIVVDSVAALV
PKAEIEGEMGDSHVGLQARLMSQALRKLSGTINKTKTVAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRMEVRRSEA
IKAKSEIIGNRTKIKFVKNKVAPPFKVAEVDIMYGEGISKTGELLDMAVEKDIIHKSGSWFSYGDTRIGQGRENAKEYLS
EHEDEMNEINIKVREAYGIPDENGNVPESQDKNTTQSAMDDKAADIDDSEEVSLDVNDSDE

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=145615 lsr_RS05640 WP_003700567.1 1119418..1120563(-) (recA) [Ligilactobacillus salivarius str. Ren]
GTGGCTAATGACAAAAATAAAGTTCAAGGCGATCAACCTGAAGAAAGATTAAAGGCTTTAGATGCAGCTTTAAAAAAGAT
TGAGAAAAAGTTCGGTAAAGGTTCCATTATGAAAATGGGAGGAAAAGTAGATACAAAGATTTCTACTATTTCTAGTGGTT
CAATTGCTATTGATGCAGGATTAGGTGTAGGTGGTTATCCACGAGGACGTATTATTGAAATTTATGGTCCAGAAAGTTCT
GGTAAGACGACAGTTGCATTACATGCAGTTGCTGAAGTTCAAAAACGTGGTGGTACAGCAGCATATATCGATGCTGAAAA
TGCGTTGGATCCTGCATATGCTACTGCACTGGGAGTGAACATTGATGAATTACTACTTTCACAACCAGACACTGGTGAAC
AAGGTTTAGAAATTGCTGATGCTTTGGTTTCATCTGGTGCAATTGATATAATTGTTGTTGACTCAGTAGCCGCTTTAGTA
CCTAAAGCTGAAATTGAGGGTGAAATGGGTGATTCTCATGTTGGGTTGCAAGCTCGTTTGATGTCACAGGCTTTAAGAAA
ACTTTCAGGTACAATCAATAAGACGAAGACTGTAGCTATATTTATTAACCAAATTCGTGAAAAAGTAGGGGTTATGTTTG
GAAATCCTGAAACAACTCCTGGTGGTCGTGCTTTGAAGTTCTATTCAACTGTTAGAATGGAAGTGCGTCGTTCCGAAGCA
ATTAAGGCAAAATCTGAAATTATTGGTAACAGAACTAAGATTAAATTTGTGAAAAATAAAGTTGCTCCACCATTCAAAGT
AGCTGAAGTTGATATCATGTATGGTGAAGGTATTTCTAAAACTGGTGAATTACTGGATATGGCTGTTGAGAAGGATATCA
TTCACAAGAGTGGTTCTTGGTTCTCTTATGGAGATACAAGAATAGGTCAAGGACGTGAAAATGCTAAGGAATATCTTAGT
GAACATGAAGACGAGATGAATGAAATTAATATCAAAGTCAGAGAAGCATACGGTATACCGGATGAAAATGGAAATGTACC
TGAATCTCAAGATAAGAATACTACTCAATCTGCTATGGATGACAAGGCTGCAGATATAGATGATTCTGAAGAAGTATCTT
TAGATGTAAATGATAGTGACGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F5VCR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

81.633

90.026

0.735
  recA Bacillus subtilis subsp. subtilis str. 168

75

87.139

0.654
  recA Streptococcus pneumoniae Rx1

65.768

97.375

0.64
  recA Streptococcus pneumoniae D39

65.768

97.375

0.64
  recA Streptococcus pneumoniae R6

65.768

97.375

0.64
  recA Streptococcus pneumoniae TIGR4

65.768

97.375

0.64
  recA Streptococcus mitis NCTC 12261

65.591

97.638

0.64
  recA Streptococcus mitis SK321

65.323

97.638

0.638
  recA Lactococcus lactis subsp. cremoris KW2

70.571

87.402

0.617
  recA Streptococcus mutans UA159

63.934

96.063

0.614
  recA Streptococcus pyogenes NZ131

70.213

86.352

0.606
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.024

86.089

0.551
  recA Vibrio cholerae strain A1552

58.046

91.339

0.53
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.046

91.339

0.53
  recA Neisseria gonorrhoeae strain FA1090

63.175

82.677

0.522
  recA Neisseria gonorrhoeae MS11

63.175

82.677

0.522
  recA Neisseria gonorrhoeae MS11

63.175

82.677

0.522
  recA Ralstonia pseudosolanacearum GMI1000

63.578

82.152

0.522
  recA Glaesserella parasuis strain SC1401

61.3

84.777

0.52
  recA Helicobacter pylori strain NCTC11637

58.631

88.189

0.517
  recA Acinetobacter baumannii D1279779

59.159

87.402

0.517
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.939

85.827

0.514
  recA Helicobacter pylori 26695

58.333

88.189

0.514
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.185

85.039

0.512
  recA Acinetobacter baylyi ADP1

60.377

83.465

0.504
  recA Pseudomonas stutzeri DSM 10701

58.879

84.252

0.496

Multiple sequence alignment