Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SU48_RS00895 Genome accession   NZ_CP011387
Coordinates   188001..189083 (+) Length   360 a.a.
NCBI ID   WP_064013599.1    Uniprot ID   A0A172T6H2
Organism   Deinococcus puniceus strain DY1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 183001..194083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SU48_RS00875 (SU48_00875) - 183843..184565 (-) 723 WP_064013595.1 hypothetical protein -
  SU48_RS00880 (SU48_00880) - 184629..185729 (-) 1101 WP_064013596.1 hypothetical protein -
  SU48_RS00885 (SU48_00885) - 186002..187207 (+) 1206 WP_064013597.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  SU48_RS00890 (SU48_00890) thpR 187204..187923 (+) 720 WP_064013598.1 RNA 2',3'-cyclic phosphodiesterase -
  SU48_RS00895 (SU48_00895) recA 188001..189083 (+) 1083 WP_064013599.1 recombinase RecA Machinery gene
  SU48_RS00900 (SU48_00900) - 189322..189921 (-) 600 WP_064013600.1 biotin transporter BioY -
  SU48_RS00905 (SU48_00905) - 189971..190930 (-) 960 WP_064015763.1 biotin--[acetyl-CoA-carboxylase] ligase -
  SU48_RS00910 (SU48_00910) - 191156..192055 (+) 900 WP_064013601.1 metalloenzyme domain protein -
  SU48_RS00915 (SU48_00915) - 192228..192866 (-) 639 WP_064013602.1 phosphoribosylanthranilate isomerase -
  SU48_RS00920 (SU48_00920) - 192863..193117 (-) 255 WP_064013603.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38006.67 Da        Isoelectric Point: 5.5805

>NTDB_id=145358 SU48_RS00895 WP_064013599.1 188001..189083(+) (recA) [Deinococcus puniceus strain DY1]
MSKDSNKDTVLHLPSDAKERAKAIENAMTQIEKSFGKGSIMKLGADSKLDVQTISTGSLSLDLALGVGGIPRGRVTEIYG
PESGGKTTLALSILAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSV
AALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYSSVRLDVR
KIGQPIKVGNDAVANTVKIKTVKNKVAAPFKEVELALVYGKGFDQIADLVGLAADMDIIKKAGSFYSYGDERIGQGKEKA
IAYIAERPEMEDEIRARVMAAIKNGGVEVASVATVAAVAE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=145358 SU48_RS00895 WP_064013599.1 188001..189083(+) (recA) [Deinococcus puniceus strain DY1]
ATGAGCAAGGACAGCAACAAAGACACCGTTTTGCACCTTCCCAGCGACGCCAAAGAACGCGCCAAGGCCATCGAGAACGC
CATGACCCAGATCGAGAAATCGTTCGGCAAGGGCAGCATCATGAAGCTGGGCGCGGATTCCAAGCTGGACGTGCAGACCA
TCAGCACGGGCAGCCTGAGCCTCGATTTGGCCCTCGGGGTGGGCGGCATTCCTCGTGGCCGCGTCACCGAAATCTACGGC
CCCGAGTCGGGCGGCAAGACCACGCTGGCCCTCAGCATCTTGGCTCAGGCCCAAAAAGCGGGCGGCACCTGCGCCTTCAT
CGACGCCGAGCACGCCCTTGACCCCGTGTATGCCCGTGCTTTGGGCGTGAATACCGATGAACTCTTGGTGTCTCAGCCCG
ACAACGGCGAGCAGGCGCTGGAAATCATGGAACTCTTGGTTCGCAGCGGCGCAATTGACGTCGTGGTGGTGGACTCCGTG
GCCGCCCTGACACCCCGCGCCGAAATCGAGGGCGACATGGGCGACAGCCTGCCCGGTTTGCAGGCCCGCCTGATGTCGCA
GGCCCTCCGCAAACTGACAGCCATCCTCAGCAAGACGGGCACCGCTGCCATTTTCATCAACCAAGTCCGCGAGAAGATCG
GCGTGATGTACGGCAACCCCGAAACCACTACCGGAGGCCGCGCCCTGAAGTTTTATTCCTCGGTGCGCCTCGACGTCCGT
AAGATCGGCCAGCCCATCAAGGTCGGCAACGACGCGGTGGCCAACACGGTGAAGATCAAGACCGTGAAGAACAAGGTCGC
CGCGCCCTTCAAGGAAGTGGAATTGGCCCTCGTGTACGGCAAGGGCTTTGACCAGATCGCCGATCTCGTGGGCCTCGCCG
CCGACATGGACATCATCAAGAAGGCGGGCAGCTTCTATTCTTACGGCGACGAGCGCATCGGGCAGGGCAAAGAGAAAGCC
ATTGCCTACATTGCCGAGCGCCCCGAGATGGAAGACGAAATCCGCGCCCGCGTGATGGCCGCCATCAAGAACGGTGGTGT
GGAAGTCGCCAGCGTCGCCACCGTTGCTGCTGTCGCGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172T6H2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

91.884

95.833

0.881
  recA Streptococcus pneumoniae R6

64.087

89.722

0.575
  recA Streptococcus pneumoniae TIGR4

64.087

89.722

0.575
  recA Streptococcus pneumoniae Rx1

64.087

89.722

0.575
  recA Streptococcus pneumoniae D39

64.087

89.722

0.575
  recA Glaesserella parasuis strain SC1401

61.128

93.611

0.572
  recA Streptococcus mitis NCTC 12261

63.777

89.722

0.572
  recA Streptococcus mitis SK321

63.467

89.722

0.569
  recA Acinetobacter baumannii D1279779

60.119

93.333

0.561
  recA Latilactobacillus sakei subsp. sakei 23K

62.229

89.722

0.558
  recA Streptococcus mutans UA159

61.92

89.722

0.556
  recA Bacillus subtilis subsp. subtilis str. 168

60.06

92.5

0.556
  recA Streptococcus pyogenes NZ131

61.61

89.722

0.553
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.939

86.944

0.547
  recA Vibrio cholerae strain A1552

62.939

86.944

0.547
  recA Neisseria gonorrhoeae MS11

60.615

90.278

0.547
  recA Neisseria gonorrhoeae MS11

60.615

90.278

0.547
  recA Neisseria gonorrhoeae strain FA1090

60.615

90.278

0.547
  recA Acinetobacter baylyi ADP1

61.83

88.056

0.544
  recA Lactococcus lactis subsp. cremoris KW2

57.975

90.556

0.525
  recA Ralstonia pseudosolanacearum GMI1000

61.039

85.556

0.522
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.177

87.778

0.519
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

56.495

91.944

0.519
  recA Helicobacter pylori 26695

56.748

90.556

0.514
  recA Helicobacter pylori strain NCTC11637

56.748

90.556

0.514
  recA Pseudomonas stutzeri DSM 10701

55.589

91.944

0.511

Multiple sequence alignment