Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   YQ44_RS01315 Genome accession   NZ_CP011319
Coordinates   305606..306712 (+) Length   368 a.a.
NCBI ID   WP_071321836.1    Uniprot ID   -
Organism   Janthinobacterium sp. 1_2014MBL_MicDiv     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 300606..311712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YQ44_RS01295 (YQ44_01305) - 300782..302830 (-) 2049 WP_071321832.1 sodium:solute symporter family protein -
  YQ44_RS01300 (YQ44_01310) - 302827..303141 (-) 315 WP_071321833.1 DUF4212 domain-containing protein -
  YQ44_RS01305 (YQ44_01315) - 303134..304672 (-) 1539 WP_071321834.1 sensor histidine kinase -
  YQ44_RS01310 (YQ44_01320) - 304669..305403 (-) 735 WP_071321835.1 response regulator transcription factor -
  YQ44_RS01315 (YQ44_01325) recA 305606..306712 (+) 1107 WP_071321836.1 recombinase RecA Machinery gene
  YQ44_RS01320 (YQ44_01330) recX 306966..307421 (+) 456 WP_071321837.1 recombination regulator RecX -
  YQ44_RS01325 (YQ44_01335) - 307827..308537 (+) 711 WP_335589257.1 DUF2889 domain-containing protein -
  YQ44_RS01330 (YQ44_01340) sucC 308616..309785 (+) 1170 WP_071321838.1 ADP-forming succinate--CoA ligase subunit beta -
  YQ44_RS01335 (YQ44_01345) sucD 309799..310680 (+) 882 WP_034746085.1 succinate--CoA ligase subunit alpha -
  YQ44_RS01340 (YQ44_01350) - 310895..311359 (+) 465 WP_083411585.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 39069.72 Da        Isoelectric Point: 6.3119

>NTDB_id=144452 YQ44_RS01315 WP_071321836.1 305606..306712(+) (recA) [Janthinobacterium sp. 1_2014MBL_MicDiv]
MDDKKAVVPASEKAKALAAALAQIEKQFGKGSVMRMDASAPIEEVQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK
TTLTLQTIAEMQKLGGTCAFIDAEHALDVGYAQKLGVNLHELLISQPDTGEQALEICDALVRSGSVDLVVIDSVAALTPR
AEIEGDMGDSLPGLQARLMSQALRKLTGSINRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGSIK
SGDEVIGNETKVKVVKNKIAPPFKEAHFDILYGAGTSREGEILDLGSDAKIVEKSGSWYSYNGERIGQGKDNARAFLQER
PALAREIENKVRASLGVRELPPLAAEKPEKADKAADKAAKAAEAKAAE

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=144452 YQ44_RS01315 WP_071321836.1 305606..306712(+) (recA) [Janthinobacterium sp. 1_2014MBL_MicDiv]
ATGGACGATAAAAAAGCTGTAGTACCCGCATCGGAAAAAGCCAAGGCGCTCGCCGCCGCACTGGCGCAGATCGAGAAGCA
GTTTGGCAAAGGTTCGGTCATGCGTATGGATGCCAGCGCACCGATCGAAGAAGTGCAAGTCGTGTCGACCGGTTCGCTCG
GCCTGGATATCGCGCTGGGCGTCGGCGGCTTGCCGCGCGGCCGCGTGGTGGAAATCTACGGTCCGGAATCGTCGGGTAAA
ACCACCTTGACCCTGCAAACCATTGCAGAAATGCAAAAATTGGGCGGCACCTGCGCCTTTATTGATGCCGAGCACGCGCT
CGACGTCGGCTATGCGCAAAAACTGGGTGTAAACCTGCATGAATTGCTGATCTCGCAACCGGATACGGGCGAGCAGGCGC
TGGAAATCTGCGACGCCCTCGTGCGTTCGGGCAGCGTCGACCTGGTGGTCATCGACTCCGTGGCCGCACTGACGCCACGC
GCCGAGATCGAAGGTGACATGGGCGATTCCCTGCCGGGCCTGCAAGCGCGTCTGATGTCGCAAGCGCTGCGTAAATTGAC
CGGTTCCATCAACCGCACGAACACCCTGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCC
CGGAAACGACCACCGGCGGCAATGCGCTGAAATTCTACGCTTCCGTGCGCCTGGACATCCGCCGTACCGGCTCGATCAAG
TCCGGCGATGAAGTGATCGGCAACGAAACCAAGGTCAAGGTCGTCAAGAACAAGATCGCGCCGCCATTCAAGGAAGCGCA
CTTCGACATCCTGTACGGCGCCGGCACCTCGCGCGAAGGCGAAATCCTCGACCTGGGTTCGGATGCCAAGATCGTGGAAA
AATCCGGTTCGTGGTACAGCTATAACGGCGAACGCATCGGCCAGGGCAAGGACAACGCCCGCGCCTTCCTGCAAGAGCGT
CCGGCACTGGCACGCGAGATCGAAAACAAGGTCCGCGCATCGCTGGGCGTACGTGAACTGCCGCCGCTGGCCGCTGAAAA
GCCGGAAAAAGCGGATAAAGCCGCCGACAAGGCGGCCAAGGCTGCGGAAGCGAAAGCGGCCGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.929

91.304

0.766
  recA Neisseria gonorrhoeae MS11

72.866

89.13

0.649
  recA Neisseria gonorrhoeae MS11

72.866

89.13

0.649
  recA Neisseria gonorrhoeae strain FA1090

72.866

89.13

0.649
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.412

92.391

0.641
  recA Vibrio cholerae strain A1552

69.412

92.391

0.641
  recA Glaesserella parasuis strain SC1401

66.571

94.293

0.628
  recA Pseudomonas stutzeri DSM 10701

70.898

87.772

0.622
  recA Acinetobacter baylyi ADP1

70.588

87.772

0.62
  recA Acinetobacter baumannii D1279779

70.279

87.772

0.617
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.366

90.489

0.601
  recA Helicobacter pylori 26695

62.391

93.207

0.582
  recA Streptococcus mutans UA159

60.34

95.924

0.579
  recA Helicobacter pylori strain NCTC11637

62.099

93.207

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

64.526

88.859

0.573
  recA Streptococcus mitis NCTC 12261

60.29

93.75

0.565
  recA Streptococcus pyogenes NZ131

63.222

89.402

0.565
  recA Streptococcus pneumoniae TIGR4

62.236

89.946

0.56
  recA Streptococcus pneumoniae Rx1

62.236

89.946

0.56
  recA Streptococcus pneumoniae D39

62.236

89.946

0.56
  recA Streptococcus pneumoniae R6

62.236

89.946

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.997

88.859

0.56
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.19

88.587

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

62.424

89.674

0.56
  recA Streptococcus mitis SK321

61.934

89.946

0.557
  recA Lactococcus lactis subsp. cremoris KW2

61.631

89.946

0.554

Multiple sequence alignment