Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   F384_RS14685 Genome accession   NZ_CP011132
Coordinates   3189118..3190179 (-) Length   353 a.a.
NCBI ID   WP_046486366.1    Uniprot ID   A0A0F6TWC0
Organism   Citrobacter amalonaticus Y19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3184118..3195179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F384_RS14670 (F384_14670) csrA 3185073..3185258 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  F384_RS14675 (F384_14675) alaS 3185621..3188248 (-) 2628 WP_046486362.1 alanine--tRNA ligase -
  F384_RS14680 (F384_14680) recX 3188503..3189003 (-) 501 WP_046486364.1 recombination regulator RecX -
  F384_RS14685 (F384_14685) recA 3189118..3190179 (-) 1062 WP_046486366.1 recombinase RecA Machinery gene
  F384_RS14690 (F384_14690) pncC 3190261..3190758 (-) 498 WP_046486367.1 nicotinamide-nucleotide amidase -
  F384_RS14695 (F384_14695) mltB 3190903..3191982 (-) 1080 WP_046486369.1 lytic murein transglycosylase B -
  F384_RS14700 (F384_14700) srlA 3192253..3192816 (+) 564 WP_046486371.1 PTS glucitol/sorbitol transporter subunit IIC -
  F384_RS14705 (F384_14705) - 3192813..3193802 (+) 990 WP_046486373.1 PTS glucitol/sorbitol transporter subunit IIB -
  F384_RS14710 (F384_14710) srlB 3193814..3194176 (+) 363 WP_046486374.1 PTS glucitol/sorbitol transporter subunit IIA -
  F384_RS14715 (F384_14715) srlD 3194187..3194966 (+) 780 WP_046486376.1 sorbitol-6-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37975.37 Da        Isoelectric Point: 4.8095

>NTDB_id=142652 F384_RS14685 WP_046486366.1 3189118..3190179(-) (recA) [Citrobacter amalonaticus Y19]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATAWLKDNPTTAKEI
EKKVREMLLNNQDDKPAFTVDDGEGVAETNEDF

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=142652 F384_RS14685 WP_046486366.1 3189118..3190179(-) (recA) [Citrobacter amalonaticus Y19]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCGCTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGTCTGGGTGAAGACCGTTCTATGGACGTGGAAACGATCTCCACCGGTTCGCTTTCACTGGATATTGCGCTGGGCG
CAGGCGGCCTGCCGATGGGCCGTATCGTCGAAATCTACGGGCCGGAGTCTTCCGGTAAAACCACGCTGACGCTACAGGTG
ATTGCCGCTGCGCAGCGCGAAGGCAAAACCTGTGCGTTTATCGACGCAGAACACGCGTTGGATCCAGTCTATGCGCGTAA
GCTGGGCGTTGATATCGACAATCTGCTCTGTTCTCAGCCGGACACCGGTGAACAGGCGCTGGAAATCTGTGACGCGCTGG
CACGTTCTGGTGCCGTTGACGTTATCGTTGTCGACTCCGTGGCGGCGTTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGTGACTCTCACATGGGCCTCGCAGCACGTATGATGAGTCAGGCGATGCGTAAACTGGCCGGTAACCTGAAGCAGTCCAA
CACGTTGCTTATCTTCATCAACCAGATCCGTATGAAAATTGGCGTGATGTTCGGTAACCCGGAAACCACCACCGGGGGTA
ACGCACTGAAATTCTACGCGTCTGTTCGTCTGGACATCCGTCGTATCGGCGCGGTGAAAGAGGGCGATAACGTGGTGGGC
AGCGAAACCCGCGTGAAGGTGGTGAAAAACAAAATCGCGGCACCGTTTAAACAGGCTGAATTCCAGATCCTTTACGGCGA
AGGCATCAACTTCTATGGTGAACTGGTTGACCTGGGCGTGAAAGAGAAGCTGATCGAGAAAGCCGGCGCATGGTACAGCT
ACAACGGCGAGAAAATTGGTCAGGGTAAAGCGAATGCAACAGCCTGGCTGAAAGACAACCCGACGACCGCGAAGGAAATT
GAGAAGAAAGTCCGCGAAATGCTGCTCAATAACCAGGATGACAAACCCGCTTTCACCGTTGATGATGGTGAAGGCGTTGC
GGAAACCAACGAAGATTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F6TWC0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

84.592

93.768

0.793
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.592

93.768

0.793
  recA Pseudomonas stutzeri DSM 10701

75.229

92.635

0.697
  recA Acinetobacter baylyi ADP1

73.134

94.901

0.694
  recA Acinetobacter baumannii D1279779

74.618

92.635

0.691
  recA Glaesserella parasuis strain SC1401

68.588

98.3

0.674
  recA Neisseria gonorrhoeae MS11

68.712

92.351

0.635
  recA Neisseria gonorrhoeae MS11

68.712

92.351

0.635
  recA Neisseria gonorrhoeae strain FA1090

68.712

92.351

0.635
  recA Ralstonia pseudosolanacearum GMI1000

71.061

88.102

0.626
  recA Streptococcus mitis SK321

60.286

99.15

0.598
  recA Streptococcus mitis NCTC 12261

60.286

99.15

0.598
  recA Streptococcus pneumoniae R6

59.77

98.584

0.589
  recA Streptococcus pneumoniae D39

59.77

98.584

0.589
  recA Streptococcus pneumoniae Rx1

59.77

98.584

0.589
  recA Streptococcus pneumoniae TIGR4

59.77

98.584

0.589
  recA Helicobacter pylori strain NCTC11637

61.128

95.467

0.584
  recA Helicobacter pylori 26695

60.831

95.467

0.581
  recA Streptococcus pyogenes NZ131

62.769

92.068

0.578
  recA Streptococcus mutans UA159

62.462

92.068

0.575
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.706

96.317

0.575
  recA Lactococcus lactis subsp. cremoris KW2

62.539

91.501

0.572
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

90.935

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

92.068

0.567
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.94

94.051

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

90.935

0.555

Multiple sequence alignment