Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LG3211_RS14500 Genome accession   NZ_CP011131
Coordinates   3542665..3543690 (-) Length   341 a.a.
NCBI ID   WP_057943459.1    Uniprot ID   -
Organism   Lysobacter gummosus strain 3.2.11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3537665..3548690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG3211_RS14485 (LG3211_3193) csrA 3538344..3538547 (-) 204 WP_036111509.1 carbon storage regulator CsrA -
  LG3211_RS14490 (LG3211_3194) alaS 3538692..3541325 (-) 2634 WP_057943458.1 alanine--tRNA ligase -
  LG3211_RS27085 recX 3541491..3541937 (-) 447 Protein_2924 recombination regulator RecX -
  LG3211_RS14500 (LG3211_3196) recA 3542665..3543690 (-) 1026 WP_057943459.1 recombinase RecA Machinery gene
  LG3211_RS14505 (LG3211_3198) lexA 3543958..3544608 (-) 651 WP_057943460.1 transcriptional repressor LexA -
  LG3211_RS14510 (LG3211_3199) - 3544723..3545664 (+) 942 WP_057943461.1 helix-turn-helix domain-containing GNAT family N-acetyltransferase -
  LG3211_RS14515 (LG3211_3200) - 3545710..3546210 (-) 501 WP_057943462.1 CinA family protein -
  LG3211_RS14520 (LG3211_3201) - 3546675..3547691 (-) 1017 WP_057943463.1 PD40 domain-containing protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36626.24 Da        Isoelectric Point: 5.1945

>NTDB_id=142629 LG3211_RS14500 WP_057943459.1 3542665..3543690(-) (recA) [Lysobacter gummosus strain 3.2.11]
MDENKKRALAAALGQIEKQFGKGSVMRMGDRAVEVAEVIGTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
QCQKNGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSAAVDIVVIDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSGTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVEKSGAWYSCGDERIGQGKENARQYLKENPEVAARL
EAQLREKFVPSDAPREEAVED

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=142629 LG3211_RS14500 WP_057943459.1 3542665..3543690(-) (recA) [Lysobacter gummosus strain 3.2.11]
ATGGACGAGAACAAAAAGCGCGCTCTTGCGGCCGCCCTGGGCCAGATCGAAAAGCAATTCGGCAAGGGCTCGGTGATGCG
CATGGGCGACCGCGCGGTCGAAGTCGCCGAGGTCATCGGCACCGGCTCGCTGATGCTCGACATCGCGCTGGGCATCGGCG
GCCTGCCCAAGGGCCGCGTGGTCGAGATCTACGGCCCGGAATCCTCCGGCAAGACCACGCTGACCCTGCAAGCCATCGCC
CAATGCCAGAAGAACGGCGGCACCGCCGCGTTCATCGACGCCGAGCACGCGCTCGATCCCATCTACGCCGCCAAGCTCGG
CGTCAACGTCGATGACCTGCTGCTGTCGCAGCCCGACACCGGTGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGCGTT
CGGCCGCGGTCGACATCGTCGTCATCGACTCGGTCGCAGCGCTGACCCCCAAGGCTGAAATCGAAGGCGAAATGGGCGAT
CAGCTGCCCGGCCTGCAGGCCCGTCTGATGAGCCAGGCGCTGCGCAAGCTGACCGGCAACATCAAGCGCTCGGGCACCCT
GGTGGTCTTCATCAACCAGCTGCGCATGAAGATCGGCGTGATGATGCCGGGCCAGAGCCCGGAAGTGACCACCGGCGGCA
ACGCGCTCAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCGATCAAGAAGGGCGACGAAATCATCGGC
AACCAGACCAAGATCAAGGTCGTCAAGAACAAGCTGGCCCCGCCGTTCAAGCAGGTCGTCACGGAAATCCTCTACGGCGA
AGGCATCTCGCGCGAAGGCGAGCTGATCGACATGGGCGTGGAAGCCAAGCTGGTCGAGAAGTCCGGCGCCTGGTACAGCT
GCGGCGATGAGCGCATCGGCCAGGGCAAGGAAAACGCGCGCCAGTACCTCAAGGAAAACCCCGAGGTCGCCGCGCGCCTG
GAAGCGCAACTGCGCGAGAAGTTCGTCCCCAGCGACGCACCGCGCGAAGAGGCCGTCGAGGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

72.372

97.654

0.707
  recA Vibrio cholerae strain A1552

71.818

96.774

0.695
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.818

96.774

0.695
  recA Acinetobacter baylyi ADP1

69.208

100

0.692
  recA Ralstonia pseudosolanacearum GMI1000

74.76

91.789

0.686
  recA Acinetobacter baumannii D1279779

68.328

100

0.683
  recA Glaesserella parasuis strain SC1401

65.33

100

0.669
  recA Neisseria gonorrhoeae MS11

69.325

95.601

0.663
  recA Neisseria gonorrhoeae strain FA1090

69.325

95.601

0.663
  recA Neisseria gonorrhoeae MS11

69.325

95.601

0.663
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.931

92.962

0.613
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.763

97.654

0.613
  recA Streptococcus mitis SK321

60.882

99.707

0.607
  recA Latilactobacillus sakei subsp. sakei 23K

61.493

98.24

0.604
  recA Bacillus subtilis subsp. subtilis str. 168

63.385

95.308

0.604
  recA Helicobacter pylori strain NCTC11637

62.27

95.601

0.595
  recA Streptococcus pneumoniae D39

61.89

96.188

0.595
  recA Streptococcus pneumoniae R6

61.89

96.188

0.595
  recA Streptococcus pneumoniae TIGR4

61.89

96.188

0.595
  recA Streptococcus pneumoniae Rx1

61.89

96.188

0.595
  recA Helicobacter pylori 26695

61.963

95.601

0.592
  recA Streptococcus mitis NCTC 12261

60.976

96.188

0.587
  recA Streptococcus mutans UA159

60

96.774

0.581
  recA Lactococcus lactis subsp. cremoris KW2

60.923

95.308

0.581
  recA Streptococcus pyogenes NZ131

59.697

96.774

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.232

96.188

0.56

Multiple sequence alignment