Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LA76x_RS09385 Genome accession   NZ_CP011129
Coordinates   2285856..2286881 (+) Length   341 a.a.
NCBI ID   WP_031371767.1    Uniprot ID   A0A0S2F9H0
Organism   Lysobacter antibioticus strain 76     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2280856..2291881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA76x_RS09365 (LA76x_2030) - 2283248..2283748 (+) 501 WP_057917563.1 CinA family protein -
  LA76x_RS09370 (LA76x_2031) - 2283882..2284823 (-) 942 WP_057917564.1 bifunctional helix-turn-helix transcriptional regulator/GNAT family N-acetyltransferase -
  LA76x_RS09375 (LA76x_2032) lexA 2284944..2285585 (+) 642 WP_057917565.1 transcriptional repressor LexA -
  LA76x_RS09380 (LA76x_2033) - 2285585..2285818 (+) 234 WP_057917566.1 hypothetical protein -
  LA76x_RS09385 (LA76x_2034) recA 2285856..2286881 (+) 1026 WP_031371767.1 recombinase RecA Machinery gene
  LA76x_RS26235 recX 2287502..2288011 (+) 510 WP_057920003.1 recombination regulator RecX -
  LA76x_RS09395 (LA76x_2036) alaS 2288176..2290809 (+) 2634 WP_057917567.1 alanine--tRNA ligase -
  LA76x_RS09400 (LA76x_2037) csrA 2290954..2291157 (+) 204 WP_031371770.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36737.35 Da        Isoelectric Point: 5.2055

>NTDB_id=142602 LA76x_RS09385 WP_031371767.1 2285856..2286881(+) (recA) [Lysobacter antibioticus strain 76]
MDENKKRALSAALSQIEKQFGKGSVMRMGDRAVEAAEVIGTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
ECQKKGGTAAFIDAEHALDPIYAGKLGVNIDDLLVSQPDTGEQALEIADMLVRSAAVDMVVVDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVLTEILYGEGISREGELIDMGVEAKLVEKSGAWYSCGDERIGQGKENARQYLKENPELAARL
EATLREKYVPSDAPRDEAVEE

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=142602 LA76x_RS09385 WP_031371767.1 2285856..2286881(+) (recA) [Lysobacter antibioticus strain 76]
ATGGACGAGAACAAAAAGCGCGCCCTTTCCGCCGCTCTTAGCCAGATCGAGAAGCAGTTCGGCAAGGGCTCGGTGATGCG
CATGGGCGACCGCGCCGTCGAAGCCGCCGAAGTCATCGGCACCGGCTCGTTGATGCTCGACATCGCCCTCGGCATCGGTG
GCCTGCCCAAGGGCCGTGTCGTCGAGATCTATGGTCCGGAATCCTCGGGCAAGACCACGCTGACCCTGCAGGCCATCGCC
GAATGCCAGAAGAAGGGCGGCACCGCGGCCTTCATCGACGCCGAGCACGCGCTCGACCCGATCTACGCCGGCAAGCTCGG
CGTCAACATCGACGACCTGCTGGTCTCGCAGCCCGACACCGGCGAGCAGGCGCTCGAAATCGCCGACATGCTGGTGCGTT
CGGCCGCGGTGGACATGGTGGTGGTCGACTCGGTCGCCGCGCTGACCCCGAAGGCCGAAATCGAAGGCGAAATGGGCGAC
CAGCTGCCGGGCCTGCAGGCCCGTCTGATGAGCCAGGCGCTGCGCAAGCTGACCGGCAACATCAAGCGCTCCAACACCCT
GGTGATCTTCATCAACCAGCTGCGCATGAAGATCGGCGTGATGATGCCGGGCCAGAGCCCGGAAGTGACCACCGGCGGCA
ACGCGCTCAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCGATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCAAGATCAAGGTCGTCAAGAACAAGCTGGCGCCTCCGTTCAAGCAGGTCCTGACCGAAATCCTCTACGGCGA
AGGCATCTCGCGCGAAGGCGAACTGATCGACATGGGCGTGGAAGCCAAGCTGGTCGAGAAGTCGGGCGCCTGGTACAGCT
GCGGCGACGAACGTATCGGTCAGGGCAAGGAAAACGCCCGCCAGTACCTCAAGGAGAACCCGGAGCTGGCCGCCCGCCTC
GAAGCGACCCTGCGCGAGAAGTACGTCCCGAGCGACGCCCCGCGCGACGAAGCCGTCGAGGAATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0S2F9H0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

71.304

100

0.721
  recA Pseudomonas stutzeri DSM 10701

72.973

97.654

0.713
  recA Acinetobacter baumannii D1279779

71.601

97.067

0.695
  recA Vibrio cholerae strain A1552

72.699

95.601

0.695
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.699

95.601

0.695
  recA Ralstonia pseudosolanacearum GMI1000

75.641

91.496

0.692
  recA Glaesserella parasuis strain SC1401

65.33

100

0.669
  recA Neisseria gonorrhoeae MS11

68.405

95.601

0.654
  recA Neisseria gonorrhoeae strain FA1090

68.405

95.601

0.654
  recA Neisseria gonorrhoeae MS11

68.405

95.601

0.654
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.508

92.962

0.628
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.855

97.361

0.622
  recA Helicobacter pylori strain NCTC11637

64.11

95.601

0.613
  recA Helicobacter pylori 26695

63.804

95.601

0.61
  recA Bacillus subtilis subsp. subtilis str. 168

64

95.308

0.61
  recA Latilactobacillus sakei subsp. sakei 23K

61.493

98.24

0.604
  recA Streptococcus pneumoniae D39

60.976

96.188

0.587
  recA Streptococcus pneumoniae Rx1

60.976

96.188

0.587
  recA Streptococcus pneumoniae R6

60.976

96.188

0.587
  recA Streptococcus pneumoniae TIGR4

60.976

96.188

0.587
  recA Streptococcus mitis SK321

60.671

96.188

0.584
  recA Streptococcus mutans UA159

60.303

96.774

0.584
  recA Streptococcus mitis NCTC 12261

60.366

96.188

0.581
  recA Streptococcus pyogenes NZ131

59.697

96.774

0.578
  recA Lactococcus lactis subsp. cremoris KW2

60.061

96.188

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.635

92.375

0.56

Multiple sequence alignment