Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VK70_RS11690 Genome accession   NZ_CP011114
Coordinates   2561014..2562075 (-) Length   353 a.a.
NCBI ID   WP_025697790.1    Uniprot ID   A0A0F7FAM3
Organism   Paenibacillus durus ATCC 35681     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2556014..2567075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VK70_RS11670 (VK70_11675) - 2556913..2557173 (-) 261 WP_025335291.1 stage V sporulation protein S -
  VK70_RS11675 (VK70_11680) - 2557375..2558169 (-) 795 WP_025697783.1 TIGR00282 family metallophosphoesterase -
  VK70_RS11680 (VK70_11685) rny 2558303..2559844 (-) 1542 WP_025697786.1 ribonuclease Y -
  VK70_RS11685 (VK70_11690) - 2560154..2560882 (-) 729 WP_036641751.1 regulatory protein RecX -
  VK70_RS11690 (VK70_11695) recA 2561014..2562075 (-) 1062 WP_025697790.1 recombinase RecA Machinery gene
  VK70_RS11695 (VK70_11700) - 2562303..2563592 (-) 1290 WP_025697792.1 competence/damage-inducible protein A -
  VK70_RS11700 (VK70_11705) pgsA 2563700..2564287 (-) 588 WP_025697794.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  VK70_RS11705 (VK70_11710) rimO 2564284..2565615 (-) 1332 WP_025697795.1 30S ribosomal protein S12 methylthiotransferase RimO -
  VK70_RS11710 (VK70_11715) - 2565753..2566244 (-) 492 WP_025690270.1 YajQ family cyclic di-GMP-binding protein -
  VK70_RS28545 - 2566417..2566578 (-) 162 WP_169733339.1 hypothetical protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38197.72 Da        Isoelectric Point: 4.9974

>NTDB_id=142378 VK70_RS11690 WP_025697790.1 2561014..2562075(-) (recA) [Paenibacillus durus ATCC 35681]
MSDRRAALEMALRQIEKQFGKGSVMKLGESTHMQVEIVPSGSLALDIALGIGGLPKGRIIEVYGPESSGKTTVALHAIAE
VQKLGGQAAFIDAEHALDPSYASKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGSINKSKTIAIFINQLREKIGVMFGNPETTPGGRALKFYSTVRLDVRRVESIKMGNDIVGNRT
RIKVVKNKVAPPFKQADIDIMYGEGISREGSLVDIGTEMDIVNKSGAWYSYEGERLGQGRENAKQFLKEHQDLALVIENK
IREASNLSTIVAPPTEAEIEAEKQEEQALLEIE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=142378 VK70_RS11690 WP_025697790.1 2561014..2562075(-) (recA) [Paenibacillus durus ATCC 35681]
TTGTCAGATCGTCGTGCAGCGCTTGAAATGGCGCTTCGTCAAATAGAGAAACAATTCGGTAAAGGTTCCGTCATGAAACT
GGGAGAATCGACTCATATGCAAGTTGAGATCGTACCCAGCGGATCGCTGGCTTTAGATATTGCCCTTGGGATTGGCGGAC
TTCCCAAAGGCCGGATTATAGAAGTATATGGACCGGAATCCTCCGGTAAGACAACAGTTGCCCTACATGCGATTGCGGAG
GTTCAGAAGCTCGGAGGACAAGCCGCCTTCATTGATGCGGAGCATGCGCTGGACCCGAGCTATGCAAGCAAACTGGGCGT
TAACATTGACGAACTGCTGCTGTCCCAGCCGGACACCGGCGAGCAGGCGCTGGAGATTGCGGAAGCGCTTGTCCGCAGCG
GCGCGGTAGATATTATTGTGGTAGACTCCGTGGCTGCGCTGGTTCCGAAAGCTGAAATCGAAGGCGAGATGGGCGATTCC
CATGTCGGCTTGCAAGCACGGCTGATGTCCCAGGCCCTGCGTAAGCTGTCCGGCTCCATTAACAAATCGAAGACGATTGC
TATCTTTATCAACCAGCTTCGTGAGAAGATCGGCGTTATGTTCGGTAATCCCGAGACGACTCCCGGCGGCCGCGCATTGA
AATTCTACTCTACGGTTCGCCTTGATGTGCGCCGCGTAGAGAGTATTAAGATGGGCAATGATATCGTGGGTAACCGCACG
CGAATCAAGGTTGTAAAGAACAAGGTGGCGCCTCCGTTCAAACAGGCGGATATCGATATTATGTACGGTGAAGGCATTTC
CAGAGAAGGAAGTCTCGTCGATATTGGCACGGAAATGGATATCGTCAACAAGAGCGGCGCATGGTACTCCTATGAAGGTG
AACGGCTGGGTCAAGGCCGCGAGAATGCGAAGCAGTTCCTGAAGGAACATCAGGATTTGGCGCTTGTCATTGAGAATAAG
ATTCGTGAAGCGAGCAATCTGTCTACAATCGTCGCCCCTCCAACGGAAGCGGAGATCGAAGCAGAGAAGCAGGAAGAACA
GGCACTGCTCGAAATCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F7FAM3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.763

93.201

0.762
  recA Latilactobacillus sakei subsp. sakei 23K

72.271

96.034

0.694
  recA Streptococcus pyogenes NZ131

70.37

91.785

0.646
  recA Streptococcus pneumoniae Rx1

68.485

93.484

0.64
  recA Streptococcus pneumoniae D39

68.485

93.484

0.64
  recA Streptococcus pneumoniae R6

68.485

93.484

0.64
  recA Streptococcus pneumoniae TIGR4

68.485

93.484

0.64
  recA Lactococcus lactis subsp. cremoris KW2

68.182

93.484

0.637
  recA Streptococcus mutans UA159

69.136

91.785

0.635
  recA Streptococcus mitis SK321

68.615

92.068

0.632
  recA Streptococcus mitis NCTC 12261

68.615

92.068

0.632
  recA Acinetobacter baylyi ADP1

63.068

99.717

0.629
  recA Acinetobacter baumannii D1279779

62.931

98.584

0.62
  recA Neisseria gonorrhoeae MS11

62.899

97.734

0.615
  recA Neisseria gonorrhoeae MS11

62.899

97.734

0.615
  recA Neisseria gonorrhoeae strain FA1090

62.899

97.734

0.615
  recA Ralstonia pseudosolanacearum GMI1000

65.951

92.351

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.355

90.935

0.603
  recA Vibrio cholerae strain A1552

66.355

90.935

0.603
  recA Glaesserella parasuis strain SC1401

61.449

97.734

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

92.635

0.589
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.062

96.034

0.586
  recA Pseudomonas stutzeri DSM 10701

63.75

90.652

0.578
  recA Helicobacter pylori 26695

59.882

96.034

0.575
  recA Helicobacter pylori strain NCTC11637

59.587

96.034

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

91.501

0.555

Multiple sequence alignment