Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   N805_RS16460 Genome accession   NZ_CP010979
Coordinates   3726476..3727543 (-) Length   355 a.a.
NCBI ID   WP_019472216.1    Uniprot ID   A0AAU8SF92
Organism   Pseudomonas putida S13.1.2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3721476..3732543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N805_RS16425 (N805_16435) - 3721727..3722092 (-) 366 WP_010952700.1 diacylglycerol kinase -
  N805_RS16430 (N805_16440) erdR 3722166..3722816 (-) 651 WP_003252375.1 response regulator transcription factor ErdR -
  N805_RS16435 (N805_16445) - 3722995..3723705 (-) 711 WP_019473852.1 tRNA-uridine aminocarboxypropyltransferase -
  N805_RS16440 (N805_16450) - 3723924..3724346 (+) 423 WP_019473853.1 quorum-sensing-regulated virulence factor family protein -
  N805_RS16445 (N805_16455) - 3724361..3724570 (-) 210 WP_019473854.1 hypothetical protein -
  N805_RS16450 (N805_16460) - 3724731..3725849 (+) 1119 WP_019473855.1 LOG family protein -
  N805_RS16455 (N805_16465) recX 3725985..3726455 (-) 471 WP_019472217.1 recombination regulator RecX -
  N805_RS16460 (N805_16470) recA 3726476..3727543 (-) 1068 WP_019472216.1 recombinase RecA Machinery gene
  N805_RS16465 (N805_16475) - 3727647..3728129 (-) 483 WP_019472215.1 CinA family protein -
  N805_RS30810 - 3728175..3728324 (-) 150 WP_019472214.1 hypothetical protein -
  N805_RS16470 (N805_16480) - 3728326..3728979 (-) 654 WP_026034551.1 hypothetical protein -
  N805_RS16475 (N805_16485) mutS 3729283..3731856 (+) 2574 WP_026034550.1 DNA mismatch repair protein MutS -
  N805_RS16480 (N805_16490) fdxA 3731997..3732320 (+) 324 WP_012270863.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37533.89 Da        Isoelectric Point: 5.3279

>NTDB_id=141071 N805_RS16460 WP_019472216.1 3726476..3727543(-) (recA) [Pseudomonas putida S13.1.2]
MDDNKKRALAAALGQIERQFGKGAVMRMGDQERQGIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYAYQGNKIGQGKANAAKYLAENPAIGAEIEK
QIREKLLKAGAAAEASKAAAVDASADDVADAEAGY

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=141071 N805_RS16460 WP_019472216.1 3726476..3727543(-) (recA) [Pseudomonas putida S13.1.2]
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGCCAATTCGGCAAAGGCGCGGTCATGCG
CATGGGTGATCAGGAGCGCCAAGGCATTCCTGCCATTTCCACCGGCTCGCTGGGCCTGGATATTGCGCTGGGCATCGGCG
GCCTGCCAAAAGGCCGTATCGTCGAGATCTATGGCCCGGAATCGTCGGGTAAGACCACACTGACGCTGTCGGTCATCGCC
GAAGCCCAGAAGAACGGTGCCACCTGCGCCTTCGTCGACGCCGAACACGCCCTCGACCCTGAGTACGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTCTCGCAGCCGGACACCGGCGAGCAGGCCCTGGAAATCACTGACATGCTGGTGCGCT
CCAACGCCGTTGACGTGATCATCGTCGACTCCGTGGCCGCGCTGGTGCCCAAGGCTGAGATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAGGCTCGTCTGATGTCCCAGGCGCTTCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATTCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCCC
TGAAGTTCTACGCCTCGGTTCGTCTGGACATCCGCCGTACCGGTGCGGTCAAGGAAGGCGACGAGGTGGTCGGTAGCGAA
ACCCGCGTCAAGATCGTCAAGAACAAGGTCTCGCCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAAGGTAT
TTACCGTAACGGCGAGATCATTGACCTGGGTGTGTCCCAAGGCCTGGTCGAGAAGTCGGGTGCCTGGTACGCCTACCAAG
GCAACAAGATCGGCCAAGGCAAAGCCAACGCTGCCAAATACCTGGCCGAGAACCCGGCTATCGGTGCCGAGATCGAGAAG
CAGATCCGTGAAAAGCTGCTGAAAGCCGGTGCTGCCGCTGAAGCCAGCAAGGCTGCAGCCGTTGATGCCAGTGCCGACGA
TGTGGCCGACGCCGAAGCCGGTTATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

88.636

99.155

0.879
  recA Acinetobacter baylyi ADP1

76.758

92.113

0.707
  recA Vibrio cholerae strain A1552

71.264

98.028

0.699
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.264

98.028

0.699
  recA Acinetobacter baumannii D1279779

74.924

93.239

0.699
  recA Glaesserella parasuis strain SC1401

69.429

98.592

0.685
  recA Ralstonia pseudosolanacearum GMI1000

71.045

94.366

0.67
  recA Neisseria gonorrhoeae MS11

71.605

91.268

0.654
  recA Neisseria gonorrhoeae MS11

71.605

91.268

0.654
  recA Neisseria gonorrhoeae strain FA1090

71.605

91.268

0.654
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

92.113

0.594
  recA Helicobacter pylori strain NCTC11637

63.303

92.113

0.583
  recA Helicobacter pylori 26695

62.691

92.113

0.577
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.631

93.239

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

90.423

0.563
  recA Streptococcus mitis SK321

56.25

99.155

0.558
  recA Streptococcus mitis NCTC 12261

56.25

99.155

0.558
  recA Streptococcus pyogenes NZ131

55.84

98.873

0.552
  recA Streptococcus pneumoniae TIGR4

58.896

91.831

0.541
  recA Streptococcus pneumoniae R6

58.896

91.831

0.541
  recA Streptococcus pneumoniae D39

58.896

91.831

0.541
  recA Streptococcus pneumoniae Rx1

58.896

91.831

0.541
  recA Streptococcus mutans UA159

58.769

91.549

0.538
  recA Latilactobacillus sakei subsp. sakei 23K

59.19

90.423

0.535
  recA Lactococcus lactis subsp. cremoris KW2

57.276

90.986

0.521
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.828

91.831

0.513

Multiple sequence alignment