Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CFTSP3_RS01045 Genome accession   NZ_CP010953
Coordinates   194032..195069 (-) Length   345 a.a.
NCBI ID   WP_023384201.1    Uniprot ID   -
Organism   Campylobacter fetus subsp. testudinum Sp3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 189032..200069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFTSP3_RS01020 (CFTSP3_0204) - 190168..190710 (+) 543 WP_058908970.1 molybdenum cofactor guanylyltransferase -
  CFTSP3_RS01025 (CFTSP3_0205) - 190707..191738 (+) 1032 WP_058908971.1 phospholipase A -
  CFTSP3_RS01030 (CFTSP3_0206) - 191777..192490 (-) 714 WP_039361789.1 AMIN domain-containing protein -
  CFTSP3_RS01035 (CFTSP3_0207) - 192507..192785 (-) 279 WP_023384198.1 hypothetical protein -
  CFTSP3_RS01040 (CFTSP3_0208) eno 192782..194032 (-) 1251 WP_023384200.1 phosphopyruvate hydratase -
  CFTSP3_RS01045 (CFTSP3_0209) recA 194032..195069 (-) 1038 WP_023384201.1 recombinase RecA Machinery gene
  CFTSP3_RS01050 (CFTSP3_0210) - 195170..196036 (+) 867 WP_023384203.1 menaquinone biosynthesis family protein -
  CFTSP3_RS01055 (CFTSP3_0211) fliQ 196036..196302 (+) 267 WP_023384205.1 flagellar biosynthesis protein FliQ -
  CFTSP3_RS01060 (CFTSP3_0212) - 196299..197060 (+) 762 WP_023384206.1 UDP-N-acetylmuramate dehydrogenase -
  CFTSP3_RS01070 (CFTSP3_0214) - 197374..197703 (+) 330 WP_023384208.1 hypothetical protein -
  CFTSP3_RS01075 (CFTSP3_0215) - 197708..198025 (+) 318 WP_058908972.1 hypothetical protein -
  CFTSP3_RS01080 (CFTSP3_0216) - 198082..198825 (+) 744 WP_023384212.1 phosphatidate cytidylyltransferase -
  CFTSP3_RS01085 (CFTSP3_0217) - 198822..199904 (+) 1083 WP_058908973.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37194.41 Da        Isoelectric Point: 4.9674

>NTDB_id=140864 CFTSP3_RS01045 WP_023384201.1 194032..195069(-) (recA) [Campylobacter fetus subsp. testudinum Sp3]
MDDNKKKSLDLALKQIDKAFGKGTVLRLGDKEIEPIDSISSGSIGLDIALGIGGVPKGRIVEVYGPESSGKTTLTLHLIA
ESQKVGGVCAFVDAEHALDVKYAKNLGVDTDNLYISQPDFGEQALDIVETLARSGAVDLIVIDSVAALTPKSEIEGDMGD
QHVGLQARLMSQALRKLTGVVHKMGTTVVFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKIATLKQSDEPIGN
RVKVKVVKNKVAPPFRQAEFDIMFGEGISKEGEIIDYGVKLDIIDKSGAWFSYDNSKLGQGRENSKAFLKENKAIADEIT
EKIRANMGDSIMSSGIDEEETQGDE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=140864 CFTSP3_RS01045 WP_023384201.1 194032..195069(-) (recA) [Campylobacter fetus subsp. testudinum Sp3]
ATGGATGATAATAAGAAAAAAAGCCTAGACCTTGCTTTAAAGCAGATTGATAAAGCTTTTGGCAAAGGCACTGTTTTAAG
GCTAGGAGATAAAGAAATAGAGCCGATAGATTCTATTTCCTCAGGATCGATAGGACTTGATATAGCTCTTGGTATAGGTG
GCGTACCAAAAGGAAGGATAGTTGAAGTTTATGGACCAGAAAGTTCTGGTAAAACAACTCTTACTTTGCATTTGATAGCA
GAATCTCAAAAAGTCGGCGGAGTTTGCGCATTTGTAGATGCGGAGCATGCGCTTGATGTTAAATATGCTAAAAATTTGGG
CGTTGATACGGATAACTTATATATTTCTCAACCAGACTTCGGAGAGCAAGCTCTTGATATAGTTGAAACTCTAGCTAGAA
GCGGCGCGGTTGATCTCATAGTCATAGATAGCGTTGCAGCTCTAACACCAAAAAGCGAGATAGAAGGCGATATGGGAGAT
CAACACGTTGGACTTCAAGCAAGACTTATGAGTCAAGCGCTTAGAAAATTAACTGGTGTAGTACATAAAATGGGAACTAC
AGTTGTATTTATCAACCAAATTCGTATGAAAATCGGCGCTATGGGTTATGGCACTCCTGAGACTACAACAGGTGGAAATG
CACTCAAATTTTACGCTTCAGTTCGTCTTGACGTACGCAAAATAGCGACTTTAAAACAAAGCGACGAGCCAATCGGAAAC
CGCGTAAAAGTAAAAGTGGTAAAAAACAAAGTAGCTCCTCCTTTTAGACAAGCTGAGTTTGACATAATGTTTGGAGAAGG
TATCAGCAAAGAAGGAGAGATAATAGATTACGGTGTAAAACTTGATATTATCGATAAAAGTGGTGCTTGGTTTAGCTATG
ATAATTCAAAATTAGGTCAAGGTAGAGAAAACTCAAAAGCATTTTTAAAAGAAAATAAAGCAATAGCAGATGAAATAACA
GAAAAAATCCGTGCAAATATGGGTGATAGCATAATGAGCAGCGGAATAGATGAAGAAGAAACGCAAGGAGATGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

84.118

98.551

0.829
  recA Helicobacter pylori 26695

76.97

95.652

0.736
  recA Helicobacter pylori strain NCTC11637

76.667

95.652

0.733
  recA Neisseria gonorrhoeae MS11

63.768

100

0.638
  recA Neisseria gonorrhoeae MS11

63.768

100

0.638
  recA Neisseria gonorrhoeae strain FA1090

63.768

100

0.638
  recA Acinetobacter baylyi ADP1

61.85

100

0.62
  recA Bacillus subtilis subsp. subtilis str. 168

65.231

94.203

0.614
  recA Pseudomonas stutzeri DSM 10701

64.832

94.783

0.614
  recA Glaesserella parasuis strain SC1401

64.329

95.072

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.952

96.232

0.606
  recA Ralstonia pseudosolanacearum GMI1000

63.526

95.362

0.606
  recA Acinetobacter baumannii D1279779

62.997

94.783

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.728

93.913

0.58
  recA Vibrio cholerae strain A1552

61.728

93.913

0.58
  recA Streptococcus mutans UA159

58.788

95.652

0.562
  recA Streptococcus pyogenes NZ131

58.788

95.652

0.562
  recA Lactococcus lactis subsp. cremoris KW2

59.146

95.072

0.562
  recA Streptococcus mitis SK321

55.942

100

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

58.537

95.072

0.557
  recA Streptococcus mitis NCTC 12261

58.232

95.072

0.554
  recA Streptococcus pneumoniae R6

57.927

95.072

0.551
  recA Streptococcus pneumoniae TIGR4

57.927

95.072

0.551
  recA Streptococcus pneumoniae D39

57.927

95.072

0.551
  recA Streptococcus pneumoniae Rx1

57.927

95.072

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.28

93.333

0.516

Multiple sequence alignment